Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g01365 | ATGCGTGGGGAAGATCAGCAAGAGGAACATCATCAGCAACAACAGGAGTGTTCACAAACAATTGAGAATATGTTTCAACAACAGCTTCTTCTCCACCAACACCTACAAAACAACAACGACGACGACAACAACAACGGAGACCATCATCATGGAACTGGAAGAGGGTTAATTTTTCCACCCGAACTCGTGTCGCCGGTTCTCCAGCCGTGGTCGTCGTCGCTTAACCCTTTTATGATCCCTCCCCCGCCATCGTTGCCATGTTCATCATCATCATCCTATGGTGGTTTGTTTAACCGGAGACCACCTAATTGTGTTCAGTTTGCTTATGATGGTTCCTCTTCCGCGGACCATCTAGGTCAGATCATATCCACCACGCTTGGACCCGTGGTTCATCCTGGCTCCATGGCTCCCTTTGGGCTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATTATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCACAGTGAAGCTGAGAGGAGGAGAAGAGAAAGAATCAACAACCATCTGGCTAAGCTCCGGAGCTTACTCCCTAATACCACTAAAACGGACAAAGCTTCACTACTAGCCGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAGACATCATTGATAGCAGAAACAAGTCCAATCCCAACAGAAGTTGACGAGGTAACAGTGGACGATGCCTCAGAGGAGATGATGATAAGTGGAGCCAAATTTGTAATAAAGGCTTCCCTTTGCTGCGAGGACCGTTCTGATCTCCTCCCGGACCTCATCAAAGCCCTCAAATCCTTGCGTTTAAGAACCCTCAAAGCTGAAATCACGACGCTTGGTGGGCGTGTAAGAAATGTGTTGTTTATCACAGCTGAAGAAGAGCAACAACATGATCCCGAACAGCAACACAATATGAGCTCTATTCAAGAAGCACTCAAAGCTGTGATGGAAAGAACAGGAGGGGATGATTCTTCTTCAGCAAATATCAAAAGACTAAGGACCACAAATAACATCAATATCCTTTGA | 1032 | 46.03 | MRGEDQQEEHHQQQQECSQTIENMFQQQLLLHQHLQNNNDDDNNNGDHHHGTGRGLIFPPELVSPVLQPWSSSLNPFMIPPPPSLPCSSSSSYGGLFNRRPPNCVQFAYDGSSSADHLGQIISTTLGPVVHPGSMAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDEVTVDDASEEMMISGAKFVIKASLCCEDRSDLLPDLIKALKSLRLRTLKAEITTLGGRVRNVLFITAEEEQQHDPEQQHNMSSIQEALKAVMERTGGDDSSSANIKRLRTTNNINIL | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8212035 | 8214586 | - | Cp4.1LG01g13440.1 | Cpe01g01365 | 462678 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g01365 | 343 | Pfam | Helix-loop-helix DNA-binding domain | 162 | 208 | IPR011598 | GO:0046983 | |
Cpe01g01365 | 343 | MobiDBLite | consensus disorder prediction | 36 | 57 | - | - | |
Cpe01g01365 | 343 | SMART | finulus | 165 | 214 | IPR011598 | GO:0046983 | |
Cpe01g01365 | 343 | Gene3D | - | 154 | 215 | IPR036638 | GO:0046983 | |
Cpe01g01365 | 343 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 159 | 208 | IPR011598 | GO:0046983 | |
Cpe01g01365 | 343 | CDD | bHLH_AtAIG1_like | 154 | 231 | - | - | |
Cpe01g01365 | 343 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 65 | 341 | - | - | |
Cpe01g01365 | 343 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 65 | 341 | IPR045847 | GO:0003700|GO:0006355 | |
Cpe01g01365 | 343 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 163 | 214 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01365 | Cpe-Chr1:8212035 | Cpe05g01517 | Cpe-Chr5:10455507 | 5.63E-40 | dispersed | |
Cpe11g00481 | Cpe-Chr11:2785282 | Cpe01g01365 | Cpe-Chr1:8212035 | 8.50E-34 | transposed | |
Cpe01g01365 | Cpe-Chr1:8212035 | Cpe01g01758 | Cpe-Chr1:13150680 | 1.27E-105 | wgd | |
Cpe01g01365 | Cpe-Chr1:8212035 | Cpe09g00272 | Cpe-Chr9:1586058 | 6.42E-158 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48848 | PF00010 | HLH | 2.30E-12 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g01365 | - | - | csv:101214615 | 431.024 |