Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01365 ATGCGTGGGGAAGATCAGCAAGAGGAACATCATCAGCAACAACAGGAGTGTTCACAAACAATTGAGAATATGTTTCAACAACAGCTTCTTCTCCACCAACACCTACAAAACAACAACGACGACGACAACAACAACGGAGACCATCATCATGGAACTGGAAGAGGGTTAATTTTTCCACCCGAACTCGTGTCGCCGGTTCTCCAGCCGTGGTCGTCGTCGCTTAACCCTTTTATGATCCCTCCCCCGCCATCGTTGCCATGTTCATCATCATCATCCTATGGTGGTTTGTTTAACCGGAGACCACCTAATTGTGTTCAGTTTGCTTATGATGGTTCCTCTTCCGCGGACCATCTAGGTCAGATCATATCCACCACGCTTGGACCCGTGGTTCATCCTGGCTCCATGGCTCCCTTTGGGCTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATTATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCACAGTGAAGCTGAGAGGAGGAGAAGAGAAAGAATCAACAACCATCTGGCTAAGCTCCGGAGCTTACTCCCTAATACCACTAAAACGGACAAAGCTTCACTACTAGCCGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAGACATCATTGATAGCAGAAACAAGTCCAATCCCAACAGAAGTTGACGAGGTAACAGTGGACGATGCCTCAGAGGAGATGATGATAAGTGGAGCCAAATTTGTAATAAAGGCTTCCCTTTGCTGCGAGGACCGTTCTGATCTCCTCCCGGACCTCATCAAAGCCCTCAAATCCTTGCGTTTAAGAACCCTCAAAGCTGAAATCACGACGCTTGGTGGGCGTGTAAGAAATGTGTTGTTTATCACAGCTGAAGAAGAGCAACAACATGATCCCGAACAGCAACACAATATGAGCTCTATTCAAGAAGCACTCAAAGCTGTGATGGAAAGAACAGGAGGGGATGATTCTTCTTCAGCAAATATCAAAAGACTAAGGACCACAAATAACATCAATATCCTTTGA 1032 46.03 MRGEDQQEEHHQQQQECSQTIENMFQQQLLLHQHLQNNNDDDNNNGDHHHGTGRGLIFPPELVSPVLQPWSSSLNPFMIPPPPSLPCSSSSSYGGLFNRRPPNCVQFAYDGSSSADHLGQIISTTLGPVVHPGSMAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDEVTVDDASEEMMISGAKFVIKASLCCEDRSDLLPDLIKALKSLRLRTLKAEITTLGGRVRNVLFITAEEEQQHDPEQQHNMSSIQEALKAVMERTGGDDSSSANIKRLRTTNNINIL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8212035 8214586 - Cp4.1LG01g13440.1 Cpe01g01365 462678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01365 343 Pfam Helix-loop-helix DNA-binding domain 162 208 IPR011598 GO:0046983
Cpe01g01365 343 MobiDBLite consensus disorder prediction 36 57 - -
Cpe01g01365 343 SMART finulus 165 214 IPR011598 GO:0046983
Cpe01g01365 343 Gene3D - 154 215 IPR036638 GO:0046983
Cpe01g01365 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Cpe01g01365 343 CDD bHLH_AtAIG1_like 154 231 - -
Cpe01g01365 343 PANTHER TRANSCRIPTION FACTOR BHLH30 65 341 - -
Cpe01g01365 343 PANTHER TRANSCRIPTION FACTOR BHLH30 65 341 IPR045847 GO:0003700|GO:0006355
Cpe01g01365 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 214 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01365 Cpe-Chr1:8212035 Cpe05g01517 Cpe-Chr5:10455507 5.63E-40 dispersed
Cpe11g00481 Cpe-Chr11:2785282 Cpe01g01365 Cpe-Chr1:8212035 8.50E-34 transposed
Cpe01g01365 Cpe-Chr1:8212035 Cpe01g01758 Cpe-Chr1:13150680 1.27E-105 wgd
Cpe01g01365 Cpe-Chr1:8212035 Cpe09g00272 Cpe-Chr9:1586058 6.42E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48848 PF00010 HLH 2.30E-12 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01365 - - csv:101214615 431.024