Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01372 ATGGGGATGAAGAGGCTGTTTATTGTTGTATTCTTTGTCTGTTTGGGAAGTTGGAGGGGCTATGCACAAGCAGGTGGAGAAGCTCCAATGGAGAAAACAGAGCTTGATGCTCTGAACTCCGCAATACAGGGCTTTGTGGGTAATTGGTGGAATGGCTCAGATCTCTACCCAGATCCTTGTGGATGGACTCCAATACAGGGGGTTTCTTGTGATATCTTCGACGGGCTCTGGTATGTCACTGCACTTAACATTGGACCAACTCATGACAACTCGCTATCTTGTGCTCCAAATGCCCATTTCAGACAGCAATTGTTTGAACTCAAACACCTTAAGAGTCTGTCCTTCTTCAGCTGCTTTGTCTCAACAAAAGGGAGCAATTCTGTTTCACTTCCAACTGACGAATGGCTAAAACTCGCCGGAAGTTTAGAATCTCTCGAGTTCAGATCAAATGACGGCCTCACCGGAAAAATTCCGGCCAGTATGGGGAGTCTATCAAAGCTGCAATCTTTGGTTTTATTAAATAATGGGTTCGTAGGTGAAATACCTGAAAATTTTGGCGGTTTGATCAAATTAAAGCGACTGGTTCTTGCTGGAAACTCGCTCACTGGTCCAATTGCTCGAAATCTTGGCCGGCTGAGCGAGCTACTGATTTTGGATTTGAGTAGAAACTTATTGTCGGGTTCTTTGCCACCGAGTTTAGGAAATTTGACTTCCCTTTTGAAGCTTGATCTTAGTGACAACAAATTGAGTGGAATTTTACCGAATGAAATCGGCGATATGGGAAACTTAACGCTTCTGGATGTGAGCAACAACAGTTTCTACGGTGGATTGAAACAGTCGTTTGAGAAGATGAGTTCGTTAGAAGAAGTAATTTTATCCAACAACCCAATCGGGGGAGAACTCAAGAGCATAAACTGGAAAAGTCTAGAAAACTTAGTGATTTTGGATCTTTCCAACATGGGTTTGAAAGGAGACATTCCGGATTCATTATCCGCATTGAAAAGGCTAAGATTTCTGGGACTTAGCCGCAACAATCTAACAGGAAACCCCTCGCCAAAACTTGCAACTCTGCCAGTTATTAGTGCGATTTACCTGTTCAGGAACAATTTGTCTGGAGACCTTAAATTCTCCGAAAAGTTCTACGGGAAGATGGGGAGGAGATTTGGGGCATGGGATAATCCGAATCTGTGCTACCCCATTGGAACTTTGGCGGCAAACAATGCTCCATATGGGGTGAAGCCATGTCAAGAAGAGGAAGAAGATGAAGATGTGATCAAACTAATGAAAACCCCCGTCAAAAAGACGAGTCTTGACATGGGAAATTCAAATTCGGCGGTCTCAAATGGCTGTTCTGGGCTTGGAATTGAAGGATTTTGGTGGAAATTTGTGGGGAAGACAATAACGATGATCCTGTTAACGAGTAGGTTGTTATGA 1434 43.51 MGMKRLFIVVFFVCLGSWRGYAQAGGEAPMEKTELDALNSAIQGFVGNWWNGSDLYPDPCGWTPIQGVSCDIFDGLWYVTALNIGPTHDNSLSCAPNAHFRQQLFELKHLKSLSFFSCFVSTKGSNSVSLPTDEWLKLAGSLESLEFRSNDGLTGKIPASMGSLSKLQSLVLLNNGFVGEIPENFGGLIKLKRLVLAGNSLTGPIARNLGRLSELLILDLSRNLLSGSLPPSLGNLTSLLKLDLSDNKLSGILPNEIGDMGNLTLLDVSNNSFYGGLKQSFEKMSSLEEVILSNNPIGGELKSINWKSLENLVILDLSNMGLKGDIPDSLSALKRLRFLGLSRNNLTGNPSPKLATLPVISAIYLFRNNLSGDLKFSEKFYGKMGRRFGAWDNPNLCYPIGTLAANNAPYGVKPCQEEEEDEDVIKLMKTPVKKTSLDMGNSNSAVSNGCSGLGIEGFWWKFVGKTITMILLTSRLL 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8252463 8255072 + Cp4.1LG01g13400.1 Cpe01g01372 462685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01372 477 Pfam Leucine Rich Repeat 262 283 IPR001611 GO:0005515
Cpe01g01372 477 PANTHER PIRIFORMOSPORA INDICA-INSENSITIVE PROTEIN 2-LIKE 7 473 - -
Cpe01g01372 477 Gene3D Ribonuclease Inhibitor 32 205 IPR032675 -
Cpe01g01372 477 Gene3D Ribonuclease Inhibitor 306 400 IPR032675 -
Cpe01g01372 477 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 7 473 - -
Cpe01g01372 477 SUPERFAMILY L domain-like 37 375 - -
Cpe01g01372 477 Gene3D Ribonuclease Inhibitor 206 305 IPR032675 -
Cpe01g01372 477 PRINTS Leucine-rich repeat signature 215 228 - -
Cpe01g01372 477 PRINTS Leucine-rich repeat signature 236 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01372 - - - cmos:111458791 859.751
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01372 Cpe09g00266 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01372 Cpe-Chr1:8252463 Cpe20g00523 Cpe-Chr20:3051054 1.68E-65 dispersed
Cpe05g00075 Cpe-Chr5:370082 Cpe01g01372 Cpe-Chr1:8252463 6.16E-52 transposed
Cpe01g01372 Cpe-Chr1:8252463 Cpe09g00266 Cpe-Chr9:1546880 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g245 . . . . . . Bma14g01692 . Cmo04g01616 Cmo18g01074 . Cma18g01052 Car04g01594 Car18g00977 Sed08g2668 Cpe09g00266 Cpe01g01372 Bhi07g01382 Tan04g0911 Cmetu12g0289 Lac13g0447 Hepe10g1861 . . Cla05g02338 Cam05g2512 Cec05g2537 Cco05g2579 Clacu05g2506 Cmu05g2368 Cre05g2485 Cone13ag0865 Cone19ag0865 . . Lsi04g00299 Csa05g02568 Chy10g01107 Cme10g00302 . . Bda07g01522 . Bpe11g01684 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008678 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01372 Cpe_Chr01 FPKM 0.216118 0.0 0.0 0.0 0.066736 0.0 0.19602 0.061019 0.0 0.0