Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01375 ATGAGTTCCTCCAAGCACCAAGAACATAACAATGGCGACTCCCCTTCGAGTTCGAAGGCGGCCAATCCCATTTTGCCACAATTGCTGCAATCCATCACTCTCAAGTTCGAAGATGTGGAGTATAGCGTCGAGTTGAGGAGTCCAAAAGCCACATGCTTTGGTTCAAACGGTGCACCCATTACGCGGACCATTCTGAATGGCGCAACCGGAATGGTCCGGCCGGGAGAGGTTCTGGCAATGCTTGGCCCATCTGGCAGTGGCAAGACCACCCTCCTTACCGCCCTTGCTGGCCGTCTTTCGGGAAATATCACCGGTAACATAACCTACAATGGCAACCCATTTTGTGGCTCCATCAAACGCAACATTGGGTTTGTCCCACAGGACGACTTGTTCTATGCTCACTTGACAGTGGTGGAAACTCTGACTTATGCAGCTATGTTAAGGCTTCCCAAAACGCTTACGAAGGCAGAGAAATTGGAGCAGGTTGAAATGGTAATCAACGAGATGGGTTTGTCGAAATGCCGGAATGTTTGGATTGGGAGTCCTCTGTTACGGGGAATTTCTGGTGGGGAACGAAAACGGGTCAGTATTGGACATGAGATTATAATGAACCCGAGTGTTGTACTGCTGGATGAGCCCACTTCAGGGCTTGACTCTACCACGGCTGAGCGTATTGCTGGGACGTTGCGGCGACTGGCTCGAGGCGGTCGGACGGTGGTGATGACAATCCATCAGCCGTCGGCTAGAATCTATGCGATGCTTGATAAGGTGCTGGTCATGTCGGAGGGATCGTCCATATACTCAGGGGATGCCGGTCGAGTCGTTGAGTATTTCGAGTCCATTGGATATGGTGCTCATGGGGGGCTCAACTTCGTGAATCCTGCTGATTTTCTTCTTGATCTTGCTAATGGCATTGCATTAGCGTCTGATACAAAAGAAGATGATACCCAACAGGGGGAGTTTCCTGAGGATCGTCAAACAGCAATCAAGCAATCTCTGATATCCATTTACAGAACCAACTTATACCCATCATTGAAGGCCGAGATTCAAGCCGAGCCTCAATCGGATTCACCTCCATTATTCACCAGCCAACAAGAACGATGGGCGTGTAGCTGGTGGGATCAATTTGTGGTGTTGCTAAGTAGAGGGTTAAAAGAAAGGAAACATGAATCCTACTCTGGCTCAAGGATTTTCCATACCATGTCAATCTCAATCATTGCAGGTATTCTCTGGTGGCGATCGAGCATCTCAAACCTTCAAGATCAGGTTGGACTCCTTTTCGTCTTCGCCGTTAACTCGAGCATTTTCGCTATTTACATGGCGGTTTTCGAGTTCCCAAAAGAGCAATCGATTCTCAACAAAGAGAGAGCCTCCAGTATGTACCGTCTCTCTTCTTACTTCATGGCTCGAACAGTCATCGACTTGCCGATGGAGATGCTATTACCGGCCATGTTCGTGACAGTACCTTACTGGATGAGTGGCCTAAAACCATCGGCATCCAAATTTATTCTGACCCTTTTGGTCACTCTTCTCAACGTGCTGACCGCTCAAGGGCTAGGCCTCGCACTTGGGGCCATTCTGATGGACGCAAAACAGGCTTCGACCTTTGCTTCTGTTATAACCGTGGGGTTTCTGATGCTGGGAGGGTTCTACATTGGACATCTCCCAGGCTTCATAGCTTGGTTGAAATATCTGTCATACTGTCACCACGCCTTTAAGCTTCTTCTGGGAATTCAATACACAGAAAATGAGACTTACGGCTGTGGGGCTGGGCTGCAATGTCGAGTAAAGGATTTTCCTTCTATCAAGCTTGTGGGTGTTGGCGGCAACTGGCTGAGCGTGGCTGTTTTGGTACTAATGGCAGTTGGGTTTAGGGTCGTGGCTTATGTTGCTTTGAGGGTGGGGCAGCCTTTATGGCCCCGATTCAAACTTATTTTCCTCAAACAGTTGCGATCTTGA 1959 48.9 MSSSKHQEHNNGDSPSSSKAANPILPQLLQSITLKFEDVEYSVELRSPKATCFGSNGAPITRTILNGATGMVRPGEVLAMLGPSGSGKTTLLTALAGRLSGNITGNITYNGNPFCGSIKRNIGFVPQDDLFYAHLTVVETLTYAAMLRLPKTLTKAEKLEQVEMVINEMGLSKCRNVWIGSPLLRGISGGERKRVSIGHEIIMNPSVVLLDEPTSGLDSTTAERIAGTLRRLARGGRTVVMTIHQPSARIYAMLDKVLVMSEGSSIYSGDAGRVVEYFESIGYGAHGGLNFVNPADFLLDLANGIALASDTKEDDTQQGEFPEDRQTAIKQSLISIYRTNLYPSLKAEIQAEPQSDSPPLFTSQQERWACSWWDQFVVLLSRGLKERKHESYSGSRIFHTMSISIIAGILWWRSSISNLQDQVGLLFVFAVNSSIFAIYMAVFEFPKEQSILNKERASSMYRLSSYFMARTVIDLPMEMLLPAMFVTVPYWMSGLKPSASKFILTLLVTLLNVLTAQGLGLALGAILMDAKQASTFASVITVGFLMLGGFYIGHLPGFIAWLKYLSYCHHAFKLLLGIQYTENETYGCGAGLQCRVKDFPSIKLVGVGGNWLSVAVLVLMAVGFRVVAYVALRVGQPLWPRFKLIFLKQLRS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8263886 8266448 + Cp4.1LG01g13380.1 Cpe01g01375 462688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01375 652 Pfam ABC transporter 67 215 IPR003439 GO:0005524
Cpe01g01375 652 Pfam ABC-2 type transporter 244 316 IPR043926 GO:0140359
Cpe01g01375 652 Gene3D - 50 281 IPR027417 -
Cpe01g01375 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 280 IPR027417 -
Cpe01g01375 652 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 635 - -
Cpe01g01375 652 MobiDBLite consensus disorder prediction 1 22 - -
Cpe01g01375 652 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 287 IPR003439 GO:0005524
Cpe01g01375 652 SMART AAA_5 74 264 IPR003593 -
Cpe01g01375 652 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 15 635 - -
Cpe01g01375 652 Pfam ABC-2 type transporter 375 580 IPR013525 GO:0016020|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01375 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - rcu:8269490 739.569
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01375 Cpe13g00026 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01308 Cpe-Chr1:7862486 Cpe01g01375 Cpe-Chr1:8263886 6.24E-85 dispersed
Cpe01g01375 Cpe-Chr1:8263886 Cpe14g00425 Cpe-Chr14:2654343 0 dispersed
Cpe13g00791 Cpe-Chr13:7140429 Cpe01g01375 Cpe-Chr1:8263886 1.27E-57 dispersed
Cpe19g00418 Cpe-Chr19:3799142 Cpe01g01375 Cpe-Chr1:8263886 5.12E-57 dispersed
Cpe04g00410 Cpe-Chr4:4768419 Cpe01g01375 Cpe-Chr1:8263886 2.60E-09 transposed
Cpe01g01375 Cpe-Chr1:8263886 Cpe13g00026 Cpe-Chr13:215796 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g240 . Blo16g01044 . . Bpe13g01320 . . . Cmo04g01619 . . . Car04g01598 . . . Cpe01g01375 . . . . . . . . . . . . . . Cone13ag0868 . Cone6ag0480 . . . . . . . . . . . . Bma06g00780 . . . . Cma15g01421 . . Cpe13g00026 . Bhi12g01423 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01375 Cpe_Chr01 FPKM 3.97561 3.965306 19.558575 20.473989 1.479724 1.989184 0.85377 56.722214 61.642853 58.52256