Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01377 ATGGTCAAATTCTCCAAGCAGTTCGAGGGACAGCTGATCCCTGAATGGAAACATGCTTTTGTCGATTATCGACAACTAAAGAAGGACCTTAAGAAACTATATCTTCTTAAAACTGATACCAATCCCGCCGCCGGTACGGCGCCAAGTACCCTCTTGTCTTCCATAAAAAAGCTCTCTTTTTTTGGTCACCAACGCAGAGATCATGGACCTATTCATGTTCATAAGAAACTTGCTTCCTCTGCTAGCAAGGGAGATATGTATGAAACAGAGCTGCTCGACCAATTTGCCGACACAGCTGCAGCTAAGAATTTCTTCTCATGTCTGGATTTCCAGCTTAATAAAGTGAATCAATTCTTCAAGACAAAGGAGGCGGAGTTCATGGAGAGAGGAGATAGCTTGAAGAAACAGCTGGAGATTCTCATTGACTTGAAAACGGCGATTCAGTGCCGGCGACAGACCGGCGATATTGCAGCTGATTCTAAGGAGGATGGTTCCATCTCCTACACGATTTCTTGTGAGGACAAAACAGAGCAAGAACAATCCCAAGAGAACAATATCAATGACGAATTGGAGAAGACAGAGTTGGCATTTTCAGACTCGCCAAGATCCGAAGAAATGGGAAATCCGACAAGAACTAAAATCTTGGATCGTAAATGGAGATCATTTTCCGGTCGGGTGATCAGTTTTCAAGGGAAGAACATAAAAATGAACATTCCTCTGACAAACCCATCTCGGACTTTCTCTGCTATAAGCCATTTATTCAGGGAAGATTTGGCGAACTCAAAGAACTGCAATGAAGGAACAAAACTTCATATTAACAAGACCAGGTTGCACCATGCAGAGAAGATGATCAAAGGAGCTTTTGTTGAGCTGTATAAGGGGCTGGGGTTTCTCAAAACTTACAGGCAATTGAATTTGCTTGCCTTTATAAAGATTTTGAAGAAGTTTGATAAAGCAATAAAGCTAGCAGATGAGGTAGAGGAGCTGTTCATCAAAAACTTTGCTGAGGATGACAAAAGAAAGGCCATGAAATACCTTAAACCAAAGCAGCGTAAAGAGTCACACGGCATTACCTTCTTCGTCGGACTGTTCACTGGTTGCTTCATTGCGCTTCTAGCTGGTTATGTTATCATGGCTCATATCATGGGGACCATGTTCAGCTTGATGTTCTTGCATTTCTTCCTCTATGGCTGCAACATCTTTGCATGGAGAAAGACTCGGATCAATTACAGCTTCATTTTCGAGCTATCCGCGACGAAGGAACTTAAATATCGAGACGTGTTCTTGATATGTACCACTTCAATGACTGCTGTTATTGGTGTCATGTTTGTTCATTTGACACTGCTTTCAAAAGGCTACTCTTATACTCAAGTTCAAGTCATCCCTGGCCTTCTCTTGTTGATGTTCTTGCTGCTACTCGTGTGCCCCTTTGACGTTTATTATCGATCGAGTCGCTACTGTTTCCTACGTGTGATCAGAAATATAGCGTTTTCACCTCTTTACAAGAATTACAACTACTGTATGAACGGAAAGCATTACCGAGATCTCGCTTATGCCGTTTCGTTTCTACCTTACTACTGGAGAGCAATGCAGTGTGCAAGGCGCTGGTTTGATGAAGGACAAACAAGCCACCTTGTGAATCTAGGAAAGTATGTGTCTGCAATGTTGGCTGCTGGGGCCAAAGTGGCATATGAGAAAGACAAGGCCAAAGGAGTTGGATGGCTATGTCTTGTGGTGGTCATGTCAAGTGGAGCAACAGTGTACCAATTGTATTGGGACTTTGTAAAGGATTGGGGATTGCTTCAAGTGAACTCCAAAAATCCATGGCTTAGGAATGATCTAATGCTTAAACGAAAGACCATTTACTACTTCTCCATGGGCTTGAACTTCATGCTTAGGCTTGCATGGTTGCAAACTGTTCTTCATTCAACTTTTGGACATGTTGATTCAAGAGTTACTGGACTGTTCTTAGCAGCTCTTGAAGTCATTAGAAGAGGGCTGTGGAACTTTTTCAGGTTGGAGAATGAGCATCTTAATAATGCTGGAAAATTTAGAGCAGTTAATCCAGTGCCACTTCCATTTGATGAAGTTGATGAGGTAGAGTGA 2106 42.36 MVKFSKQFEGQLIPEWKHAFVDYRQLKKDLKKLYLLKTDTNPAAGTAPSTLLSSIKKLSFFGHQRRDHGPIHVHKKLASSASKGDMYETELLDQFADTAAAKNFFSCLDFQLNKVNQFFKTKEAEFMERGDSLKKQLEILIDLKTAIQCRRQTGDIAADSKEDGSISYTISCEDKTEQEQSQENNINDELEKTELAFSDSPRSEEMGNPTRTKILDRKWRSFSGRVISFQGKNIKMNIPLTNPSRTFSAISHLFREDLANSKNCNEGTKLHINKTRLHHAEKMIKGAFVELYKGLGFLKTYRQLNLLAFIKILKKFDKAIKLADEVEELFIKNFAEDDKRKAMKYLKPKQRKESHGITFFVGLFTGCFIALLAGYVIMAHIMGTMFSLMFLHFFLYGCNIFAWRKTRINYSFIFELSATKELKYRDVFLICTTSMTAVIGVMFVHLTLLSKGYSYTQVQVIPGLLLLMFLLLLVCPFDVYYRSSRYCFLRVIRNIAFSPLYKNYNYCMNGKHYRDLAYAVSFLPYYWRAMQCARRWFDEGQTSHLVNLGKYVSAMLAAGAKVAYEKDKAKGVGWLCLVVVMSSGATVYQLYWDFVKDWGLLQVNSKNPWLRNDLMLKRKTIYYFSMGLNFMLRLAWLQTVLHSTFGHVDSRVTGLFLAALEVIRRGLWNFFRLENEHLNNAGKFRAVNPVPLPFDEVDEVE 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8279352 8284248 + Cp4.1LG01g13420.1 Cpe01g01377 462690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01377 701 ProSiteProfiles EXS domain profile. 508 701 IPR004342 GO:0016021
Cpe01g01377 701 Pfam EXS family 385 502 IPR004342 GO:0016021
Cpe01g01377 701 Pfam EXS family 514 678 IPR004342 GO:0016021
Cpe01g01377 701 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 2 318 - -
Cpe01g01377 701 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 1 2 318 - -
Cpe01g01377 701 Coils Coil 172 193 - -
Cpe01g01377 701 MobiDBLite consensus disorder prediction 173 210 - -
Cpe01g01377 701 ProSiteProfiles SPX domain profile. 2 330 IPR004331 -
Cpe01g01377 701 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 1 317 502 - -
Cpe01g01377 701 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 1 502 699 - -
Cpe01g01377 701 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 317 502 - -
Cpe01g01377 701 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 502 699 - -
Cpe01g01377 701 MobiDBLite consensus disorder prediction 176 199 - -
Cpe01g01377 701 Pfam SPX domain 2 35 IPR004331 -
Cpe01g01377 701 Pfam SPX domain 71 322 IPR004331 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01377 K24195 XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1 - csv:101206666 1242.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01377 Cpe09g00260 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01377 Cpe-Chr1:8279352 Cpe03g01529 Cpe-Chr3:11932903 2.15E-142 dispersed
Cpe13g00964 Cpe-Chr13:8050573 Cpe01g01377 Cpe-Chr1:8279352 4.96E-06 dispersed
Cpe19g00113 Cpe-Chr19:910331 Cpe01g01377 Cpe-Chr1:8279352 1.86E-13 transposed
Cpe01g01377 Cpe-Chr1:8279352 Cpe09g00260 Cpe-Chr9:1521352 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g223 Blo01g00437 . . . . . Bma14g01687 . Cmo04g01621 Cmo18g01077 . Cma18g01055 Car04g01600 Car18g00979 Sed02g1420 Cpe09g00260 Cpe01g01377 Bhi07g01386 Tan04g0919 Cmetu10g1688 Lac13g0442 Hepe10g1855 . . Cla05g02345 . . Cco05g2586 Clacu05g2513 . Cre05g2491 Cone13ag0869 Cone19ag0870 Cone6ag0482 Cone9ag0494 Lsi04g00305 Csa05g02563 Chy10g01103 Cme10g00307 . Blo11g00822 Bda07g01518 . Bpe11g01680 . . . . . . . . . Car15g00855 . . . . . . . . . . . . . . . . . . Chy09g00646 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004322 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01377 Cpe_Chr01 FPKM 11.225558 11.248919 12.058209 13.462949 17.804024 17.30867 17.796564 18.813101 17.572496 17.473587