Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cpe01g01385	ATGCTTCAAGAACTTTTCATTTTGTTCTTCTTGTTCTTGTTTTGCTTAGGGAATTCTTCTGTAAATGCTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTGCAAGCCCTGATGGCCATCAAAGCTGCTCTGAAAGACCCTCATTCTGTTCTTAATTGGGATGAAAATGCTGTGGATCCATGTAGCTGGACCATGATCACCTGTTCTCCACAGAAACTCGTCATTACCTTAGGAGCTCCTAGTCAGAACTTGTCGGGTACCCTGTCGCCGAGCGTCGGAAATTTGACAAATCTTCAGTCGGTGCTTCTACAGTACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTGGCCTTGCCACTCTTGATCTTTCAAGCAATGCCTTCCATGGACAAATTCCCACTTCTTTCTCCCATCTTAAGAGTCTTCAATATCTGAGGCTAAATAATAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGCTGGATCTGTCTTGTAATAATCTGAGTGGCCCATTGCCCAGATTGCTACCTAAAACCTACAACCTTGCTGGGAATTCGCTCATTTGCTCGCTTGGGTCCGAGCATAGCTGCAATGGCACTGCTCCACCTCTCTTATTTCCAGTCGATACGCCTCAAACACCTTCTGGGAGATCCAAGAGCCACAGATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGCGTTGTTCTGCTGACTGTTGGGTTAGGCTGCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGATCAACGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATTTTCCAGTTCAGAGAGCTTCAAGCTGCCACAAATAACTTCAGCAGTAAAAACTTGGTGGGAAAGGGTGGGTTTGGGTATGTGTACAAAGGGTACCTTCAAGATGGTACAGTTGTAGCTGTGAAGAGGCTAAAAGATGGAAATGCTATCAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCCTAGCTGTGCACCGGAACCTCCTCCGTCTTTACGGGTTCTGTACGACAACCTCAGAGAGACTGTTGGTTTACCCCTATATGTCCAACGGCAGTGTCGCATCCCGTCTCAAAGAGATGTCAAATATCAACTCTAATATATTGCAGGTAAAGAAAATTAACCAAGAAAAGAAGCTTGAAATACTAGTTGACAAGGATCTAAGGAAAACTTACGACTGGATCGAGCTTGAAGAAATGGTTCAAGTAGCTCTCTTATGTACGCAGTACCTTACAACCACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCAGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAACGAATTCTCCTCTTCCGGGCAATATTCTGATCTTACAGATGATTCTTCCTTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA	1512	44.58	MLQELFILFFLFLFCLGNSSVNALLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWTMITCSPQKLVITLGAPSQNLSGTLSPSVGNLTNLQSVLLQYNNISGTIPMELGNIPGLATLDLSSNAFHGQIPTSFSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSCNNLSGPLPRLLPKTYNLAGNSLICSLGSEHSCNGTAPPLLFPVDTPQTPSGRSKSHRLALAFGSSLGCVVLLTVGLGCFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGYVYKGYLQDGTVVAVKRLKDGNAIRGEIQFQTEVEMISLAVHRNLLRLYGFCTTTSERLLVYPYMSNGSVASRLKEMSNINSNILQVKKINQEKKLEILVDKDLRKTYDWIELEEMVQVALLCTQYLTTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSGQYSDLTDDSSLLAQAMELSGPR	503

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	8342384	8345210	+	Cp4.1LG01g13270.1	Cpe01g01385	462698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cpe01g01385	503	ProSiteProfiles	Protein kinase domain profile.	299	503	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cpe01g01385	503	Pfam	Protein tyrosine and serine/threonine kinase	302	397	IPR001245	GO:0004672\|GO:0006468
	Cpe01g01385	503	SUPERFAMILY	L domain-like	33	194	-	-
	Cpe01g01385	503	Gene3D	Phosphorylase Kinase; domain 1	268	374	-	-
	Cpe01g01385	503	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	398	503	-	-
	Cpe01g01385	503	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	8	391	-	-
	Cpe01g01385	503	PANTHER	PROTEIN NSP-INTERACTING KINASE 2-LIKE	398	503	-	-
	Cpe01g01385	503	PANTHER	PROTEIN NSP-INTERACTING KINASE 2-LIKE	8	391	-	-
	Cpe01g01385	503	Pfam	Leucine rich repeat	120	180	IPR001611	GO:0005515
	Cpe01g01385	503	Gene3D	Transferase(Phosphotransferase) domain 1	375	472	-	-
	Cpe01g01385	503	Pfam	Leucine rich repeat N-terminal domain	31	69	IPR013210	-
	Cpe01g01385	503	Gene3D	Ribonuclease Inhibitor	30	211	IPR032675	-
	Cpe01g01385	503	SUPERFAMILY	Protein kinase-like (PK-like)	276	391	IPR011009	-
	Cpe01g01385	503	ProSitePatterns	Protein kinases ATP-binding region signature.	305	327	IPR017441	GO:0005524

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cpe01g01385	Cpe04g01421	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cpe01g01385	Cpe-Chr1:8342384	Cpe13g01002	Cpe-Chr13:8267740	0	dispersed
	Cpe14g00219	Cpe-Chr14:1241039	Cpe01g01385	Cpe-Chr1:8342384	2.28E-112	dispersed
	Cpe01g01385	Cpe-Chr1:8342384	Cpe09g00254	Cpe-Chr9:1462093	2.60E-54	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	62150	PF07714	PK_Tyr_Ser-Thr	8.70E-14	CL0016	Cpe	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cpe01g01385	-		-	csv:101208127	644.425