Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01386 ATGGGTGACATTTTGGGCATGGATCATTTAAGCGATCTGCCTCAGAGCATTATAGAATGCATTCTCACTAGGTTACCGATTAGAGATGCCATTAGAACCAGTATTTTATCTAGGAGATGGAGATATAAGTGGAATACCCTTACTCAACTTGTGTTTGATGATGATTGTGTTGCCATGTCCAACGATGGAATTTATGAAGACCTTATATATTTTATCACTCATGTTCTTTTTCTTCATGAAGGTCCAATTCACAAGTTCCATCTTTCTGCTACCTACTTACAGAATACCCCAGATTTAGATCAGTGGATGCTTTTCCTTTCAAGGAAGGGCATCAGGGAATTGATTATTGAATTGGGAGACGGTGAGTGGTTTAGGGTTCATTCTTGTCTTTTTAACTGTAGTAAATTGACCCTATTGGAGCTGTATCGTTGTGAATTGGATCCACCTCCTACCTTTAAGGGATTCTTATGCTTGAAAAGCCTAAAGCTTCATCAAGTTCTGATTGCACCCGAAGACATTGAAAGTCTTATTGCTAATTGTCCACTCCTTGAGACTCTGGCGCTTTCCTACTTCGATAGTCTAGTCCTTAATATCTGTGCTCCCAATCTCAAGTATCTCTATCTTGAAGGCGAGTTTAGAGACATATGTCTCAAAAACACGCCACTCTTGGTTGCAATTTCGGTTGCATTATATATGAATGATGATACTGAGCCCTTTGGTGACAATTCTGATTGCAATTTTGAGAAGTTTTTTGGTGGGGTGCCTTATCTTGAGAAACTTACAGGGCATGTTTATTTCACCAAGTATCTGAGTATAGGTAATAGTGCCAGAACTCTACCGGTTTCACATATCTATTTAAGGAGTATTGAACTGCACCAAGTCAGTTTTGAAGATATGAATGAGATACTTGTTGTGCTTCGCTTGATTACCAGCTCTCCGAATTTGGAGGAGCTGCATGTTTCGGGCTCCTCAAACCCTGTGGCTGCTTCAGAAGCACCTGACTTGGACTTTTGGGAGAATGAATGTCCTTCGAACTGTACATTTGGTAAACTTAAAGTTGTGAAAACGACAGATATGTCTGGTGTACCACACGAGATGGAATTTATTAAATATTTGCTTAGGAATTGTCCGGTGCTTGAGACAATGAGTATCAGACCTTGTGTCTATGTTACAGATCGACGGTTGAATATGTTGATTGAACTGTTAAGATTTAGGAGGGCTTCACCTCAAGCAGAAATTTTGTTCATCCAAGAATAG 1257 39.7 MGDILGMDHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWNTLTQLVFDDDCVAMSNDGIYEDLIYFITHVLFLHEGPIHKFHLSATYLQNTPDLDQWMLFLSRKGIRELIIELGDGEWFRVHSCLFNCSKLTLLELYRCELDPPPTFKGFLCLKSLKLHQVLIAPEDIESLIANCPLLETLALSYFDSLVLNICAPNLKYLYLEGEFRDICLKNTPLLVAISVALYMNDDTEPFGDNSDCNFEKFFGGVPYLEKLTGHVYFTKYLSIGNSARTLPVSHIYLRSIELHQVSFEDMNEILVVLRLITSSPNLEELHVSGSSNPVAASEAPDLDFWENECPSNCTFGKLKVVKTTDMSGVPHEMEFIKYLLRNCPVLETMSIRPCVYVTDRRLNMLIELLRFRRASPQAEILFIQE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8343439 8347795 - Cp4.1LG01g13300.1 Cpe01g01386 462699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01386 418 PANTHER F-BOX PROTEIN-LIKE 7 390 - -
Cpe01g01386 418 SMART 9598neu4hmm 345 416 IPR006566 -
Cpe01g01386 418 PANTHER - 7 390 - -
Cpe01g01386 418 SUPERFAMILY RNI-like 105 400 - -
Cpe01g01386 418 Pfam F-box domain 10 42 IPR001810 GO:0005515
Cpe01g01386 418 Gene3D Ribonuclease Inhibitor 15 416 IPR032675 -
Cpe01g01386 418 Pfam FBD 345 384 IPR006566 -
Cpe01g01386 418 SUPERFAMILY F-box domain 6 63 IPR036047 GO:0005515
Cpe01g01386 418 ProSiteProfiles F-box domain profile. 7 68 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01386 - - - csv:101208370 812.372
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01386 Cpe-Chr1:8343439 Cpe11g00611 Cpe-Chr11:3854248 1.53E-15 dispersed
Cpe10g00281 Cpe-Chr10:1657161 Cpe01g01386 Cpe-Chr1:8343439 4.71E-08 dispersed
Cpe05g01463 Cpe-Chr5:10160553 Cpe01g01386 Cpe-Chr1:8343439 1.67E-09 transposed
Cpe01g01386 Cpe-Chr1:8343439 Cpe09g00253 Cpe-Chr9:1459618 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1027 . . . . . . . . Cmo04g01632 . . Cma18g01071 Car04g01613 . . . Cpe01g01386 . . . . . . . Cla05g02358 Cam05g2527 Cec05g2554 Cco05g2595 Clacu05g2522 Cmu05g2384 Cre05g2499 . . . Cone9ag0506 . . . . . Blo11g00816 Bda07g01512 . Bpe11g01675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007651 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01386 Cpe_Chr01 FPKM 1.391609 1.4862 2.180269 2.533312 3.403362 2.719555 3.112596 1.966347 1.549551 2.289906