Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01391 ATGAAAGCTGACACTCTAAGCATACACAACCCTGCTCTTCCGCACCCAGTGAGGCCTTTCAACAGAGCTTCTTTCCCGCGCTCAATTCTCTTCTCTACTTCCGGTTTCATTCCCAAACCTTCCCGCCATCCGGGTTCCTTTCGCTTGCCTCACACCTCCTGCTTCAAGGGCGTGCGATATGACAGTCCAGTAATGGGCGCAACGGAGTTATCCGAGCTTGAAGATGTGGAATTGATGGTGGAGATGTGCATTACACATACACTGCCTCCTGCTCTGACGCTTAAGCAGGGGCTGGAGAGTATCAGTGAGGCTATTGATAAGTTGAAGTTTGAATCTCCACGTTCTTCCGACGGAGTTTTCAGGTTTCAGGTGGCTGTTCCCCCGAGTGCAAGAGCTCTTATGTGGTTTTGTTGTCAACCAGAGTCATCTGAAGTGTATCCTATCTTTTTCCTTTCCAAGGAGAAGGACGCAACAATTAAGTCACTGTACTTGAATGATACTCGCGGTGTTTTTGGAATTGGGACTGCAATTTACTTTGCTAGCTTGTCTTCTACTTCATCAAAACAATGTACATTGAAAAGGTATCTCATGAATGATTCAGCTCCTATTATGGCTTATGGTTTTGTTAATGCTAACACCGGAGCGACATCTTCACTGAAGAACGAGGCTGGTCATTCATACTTTTGCGTTCCTCAAATTGAGTTGAATGAGTACGAGGGTGTTTCTGTTCTCTCTGCAACACTTGCATGGAGTGAAGCTTTCCCTTGTACATTTGAGGAAGCTCTTCATTCTTTGGGGTCATCTATCTACCAGATTGGTACTAATTTTCCATCTAAAGAAAACTTCCAGTACAAATATATAAGATCTTCTTTAACAGCTTCGAAACTTGTGAACGTGACACATCAGATGGGATACATGAAAGTATTTTCTGTGGCTGGCAAAAGCTTCAGGACTGGCATCATGGAAATGAAGGAGTCTGCACGCTCCCATCAATTCTGCATTCGGCTTTCACCAAGTGTTGCCGTTGCATGTAATATGTTGGATCGTACCAACGAAACTTGTCTCTCAGAGCAAGAGCATGCCAACATTAATGCTCTCTGGGCATCGTTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACGGTATCTCCTGGATCAAGATCGTCCCCTCTTGCCATTGCTGCTGCAAGTCATCCCCTGATAACATGTATTGCTTGCTTTGATGAACGCTCTCTTGCTTTTCATGCGATCGGGTATGCAAAAGGATCTCATAGCCCAGCAGTCGTAATCACATCATCAGGCACTGCTGTTTCGAATCTTCTGCCTGCTGTTGTTGAAGCTAGTCAAGATTTTCTTCCTCTTCTATTGCTCACAGCTGACCGCCCCCTGGAGCTGCAAGATGCAGGAGCAAATCAAGCTATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCCCCAACTGATGAAATTCCCGCCAGAATGGTGCTTACCACTCTTGATTCTGCTGTACATTGGGCAACCTCTTCGCCTTGTGGCCCTGTTCACATAAATTGTCCATTTAGGGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTCCTTAAATGGATTACAAAATTGGTTATCAAGCAGTGAAGCTTTTACCAAATATATTCGACTCGAAGCATCTCCAATGTCTATTGATACTTTTGGCCATATGGCAGAGGTTTTAAAAGTAATCCATGGAGCCAGAAATGGAATTCTACTTCTTGGGTCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTGTTGGCCAAACATATTTCATGGCCTATAGTAGCTGATGTATTGTCTGGTTTACGATTGAGAAAGAGCTTGTCTTCCTTCCTAGAAGTGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCATGCCTTGCTTTCTGATTCAGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGATGGGAAGCAGGGTAACAAGCAAACGTGTTTCAAAGATGCTAGAGGACTGCAGTCCCTGTTCATACATCATGGTTGATGAGCATCCAGGTCGTCATGATCCATCGCATATTGTGACCCATAGAATTCAAAGCACCGTCTTAGAATTTGTGGGTTGCTTACTTAAAACTGGTTTTCCTCGCAATAGGAGCAAGTGGACTGCTACTCTACAAGCATTGAATATGATGGTTGAGTGGGAAATACAATTTCAAATTTCTGCTAACTACTGTCTATCTGAGCCACAAGTTGCTCAGGTAATCTCAGAGGCACTTCCATTTGATTCTGTTCTGTTCTTGGGGAATAGCATGCCAATCCGTGATGTTGATATGTATGCACGTGGTTGGTCAAAATGCACCGACAGTGTAGCGGTTAGACCATTAAACTTACAACTGCCTTTTTGCTGGACATGGACTTCTGGAAATAGGGGAGCCAGTGGTATTGACGGACTTCTAAGCACAGCTGTTGGTTTCTCTGTTGGCTGCAACAAACGAGTGCTTTGTGTAGTCGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTGGCAATTTTGAACCAGAGGATGACGAGGAAACCAGTGACTGTAGTTGTAATCAATAATAATGGTGGGGCAATCTTTAGTCTCCTCCCTATCAAGGACAAAGTAGAGGCAGCAATACTGGACCAGTTCTTCCACACCTCTCACAAGATTTCACTCCGTAGCTTATGTGTGGCACATGGCCTGAAGCATTTACATGTACGGACAAAGATGGAACTCCAAGATGCTTTATTTATGTCTCAATGTGAAGAAAATGACTGCATAATCGAGGTCGAAAGTTCCATTGATGCCAATACTTCCTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGACCATGGTTTACGGATCTTTTCAAGGCTTTATTTTGAAGAATCTGTTTCACCTGGACTCTTCCTTTGCAAGATAAGTAGAATGGAATACACATTGTTCAGAATCCCTCTATGTGCTCCACCTACAACTTCTTGTAATTCTATTGATCAAGTCAATCGGAGCTTCTTCAGAGAAGGTTTTGTTTTGTCTTTGTTTCTTGAGGACGGAAGTCTTGGGCTTGGTGAGGTAGCCCGACAAGGGAATGTCATGTATGATGCTGCAGTTGTACAGGAAGTAAGGAAGAAGCTTGGCAACCAGATTGAACTCCGTGTTGATGCCAATCGGAATTGGAGCTATGAAGAAGCTATTCTATTTAGCTCTTTGGTGAAGGACTGTGGCTTGCAATATATTGAGGAACCAGTTATGGATGAAGATGCTATTGTTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTATCGATGGTATTCAAGATAATCCTGTGAAAGAACTTGCAAAGTATGTTCATCCCGGAATTGTTGCTATAGTTATAAAACCCAGTGTCATTGGCGGATTTGAAAATGCAGCATTAGTAGCAAGGTGGGCACAGCAACACGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTATCTGGATACATACATTTATCCTGTTATCTGGAGCTTCAGAATGCAGAAATAAGAAAACTGATGGATATTCAACCAGCTCCATCTATAGCCCACGGTCTAGGAACTTTCCGTTGGCTTGACGAAGATGTAACTGTCAATCCTCTCAGAATTGGTCGTGACCCTCATAGTGGCATTATAGAAGCATCTGTTGCTGAGGCTAATCGACTTCTAAAAAGTTTTCAAATCAACCAGAAGTTTGTTTGTAGAAAGTTTACTGAAGAGCAAGTTTGTAGGTACAAATTAACTGTAGACTCAAAGGGGTTCTCTTATTTAATAAAAGTTCTAGAGGTTGGACAAAGAACAAACGTAAAGCTTCTGCAGGATAATGTGCTATTATTTCTTCATGGATTTCTTGGGACTGGTGAAGACTGGATTACAATCATGAAGGCCATCTCAGGTTCAGCTAGATGCATTTCTATTGACCTTCCTGGTCATGGGGAATCAACAACACAAAAGAATGATTGTGATGTTCATGGTGTGGAGGAACCAAGTTTTTCTATGGAGGTTGTTGCTAATCTACTGTATAAGTTGATTCATCATCTTGCTCCTGGTAAAGTTAACCTCGTAGGGTATTCAATGGGGGCTAGGATTGCCATGTACATGGCCTTGAGATTTGCTGATAAGATTGGAAGAGCTGCTATAATATCTGGAAGCCCTGGATTAAAAGACAAGATGGCAAGAAGAATCCGGAGAGTTAAAGATGATTCTAGAGCACGAATCCTTAAGGCCTATGGTTTAGAGAGCTTTCTTGAAGCATGGTATAGTGGGGAACTATGGAAAAGTTTAAGAGAACATCCACATTATAGTCAAATTATTGCCAGCCGATCGAAGCATGATGATGTGCAGCATCTTGCAAAAGCTCTATCTGATTTAAGCATTGGAAGGCAGCCGAAGATCAAGGATGAACCAATTGTTGACCTCCATGAAATAGTCGAGATCCCGGACTCAGGACATGCTGCCCATCTGGAGAATCCTCTTGCTGTTATCAATGCATTAAGTAAATTTCTAATAAGGAGTAGAACACAGTTCTACAATTCAGATTTCGCAGGCCAAGTCGCAATTACGCATGAGAGCCACCTTTTGTAA 4686 42.47 MKADTLSIHNPALPHPVRPFNRASFPRSILFSTSGFIPKPSRHPGSFRLPHTSCFKGVRYDSPVMGATELSELEDVELMVEMCITHTLPPALTLKQGLESISEAIDKLKFESPRSSDGVFRFQVAVPPSARALMWFCCQPESSEVYPIFFLSKEKDATIKSLYLNDTRGVFGIGTAIYFASLSSTSSKQCTLKRYLMNDSAPIMAYGFVNANTGATSSLKNEAGHSYFCVPQIELNEYEGVSVLSATLAWSEAFPCTFEEALHSLGSSIYQIGTNFPSKENFQYKYIRSSLTASKLVNVTHQMGYMKVFSVAGKSFRTGIMEMKESARSHQFCIRLSPSVAVACNMLDRTNETCLSEQEHANINALWASFIVEECSRLGLTVSPGSRSSPLAIAAASHPLITCIACFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLLPAVVEASQDFLPLLLLTADRPLELQDAGANQAINQVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVRKWLKFDVIIQMGSRVTSKRVSKMLEDCSPCSYIMVDEHPGRHDPSHIVTHRIQSTVLEFVGCLLKTGFPRNRSKWTATLQALNMMVEWEIQFQISANYCLSEPQVAQVISEALPFDSVLFLGNSMPIRDVDMYARGWSKCTDSVAVRPLNLQLPFCWTWTSGNRGASGIDGLLSTAVGFSVGCNKRVLCVVGDVSFLHDTNGLAILNQRMTRKPVTVVVINNNGGAIFSLLPIKDKVEAAILDQFFHTSHKISLRSLCVAHGLKHLHVRTKMELQDALFMSQCEENDCIIEVESSIDANTSFHSVLRKFTCQAVDHGLRIFSRLYFEESVSPGLFLCKISRMEYTLFRIPLCAPPTTSCNSIDQVNRSFFREGFVLSLFLEDGSLGLGEVARQGNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEAILFSSLVKDCGLQYIEEPVMDEDAIVKFCEESGLPVALDETIDGIQDNPVKELAKYVHPGIVAIVIKPSVIGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYIHLSCYLELQNAEIRKLMDIQPAPSIAHGLGTFRWLDEDVTVNPLRIGRDPHSGIIEASVAEANRLLKSFQINQKFVCRKFTEEQVCRYKLTVDSKGFSYLIKVLEVGQRTNVKLLQDNVLLFLHGFLGTGEDWITIMKAISGSARCISIDLPGHGESTTQKNDCDVHGVEEPSFSMEVVANLLYKLIHHLAPGKVNLVGYSMGARIAMYMALRFADKIGRAAIISGSPGLKDKMARRIRRVKDDSRARILKAYGLESFLEAWYSGELWKSLREHPHYSQIIASRSKHDDVQHLAKALSDLSIGRQPKIKDEPIVDLHEIVEIPDSGHAAHLENPLAVINALSKFLIRSRTQFYNSDFAGQVAITHESHLL 1561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8368472 8384968 + Cp4.1LG01g13240.1 Cpe01g01391 462704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01391 1561 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 361 965 IPR004433 GO:0009234|GO:0030976|GO:0070204
Cpe01g01391 1561 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 826 933 IPR011766 GO:0003824|GO:0030976
Cpe01g01391 1561 SMART MR_MLE_2 987 1119 IPR013342 -
Cpe01g01391 1561 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 382 534 IPR012001 GO:0030976
Cpe01g01391 1561 Gene3D alpha/beta hydrolase 1307 1536 IPR029058 -
Cpe01g01391 1561 Gene3D - 754 964 - -
Cpe01g01391 1561 Gene3D - 571 747 - -
Cpe01g01391 1561 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 361 537 IPR029061 -
Cpe01g01391 1561 SUPERFAMILY DHS-like NAD/FAD-binding domain 520 737 IPR029035 -
Cpe01g01391 1561 SUPERFAMILY alpha/beta-Hydrolases 1310 1536 IPR029058 -
Cpe01g01391 1561 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1071 1102 IPR018110 GO:0009063
Cpe01g01391 1561 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 753 933 IPR029061 -
Cpe01g01391 1561 Gene3D - 359 553 - -
Cpe01g01391 1561 SUPERFAMILY Enolase C-terminal domain-like 1050 1238 IPR036849 -
Cpe01g01391 1561 CDD TPP_PYR_MenD 371 527 - -
Cpe01g01391 1561 TIGRFAM menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 367 835 IPR004433 GO:0009234|GO:0030976|GO:0070204
Cpe01g01391 1561 Pfam Middle domain of thiamine pyrophosphate 543 776 IPR032264 -
Cpe01g01391 1561 CDD TPP_SHCHC_synthase 755 950 - -
Cpe01g01391 1561 Pfam Enolase C-terminal domain-like 1051 1219 IPR029065 -
Cpe01g01391 1561 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 170 1538 IPR004433 GO:0009234|GO:0030976|GO:0070204
Cpe01g01391 1561 Gene3D - 1043 1243 IPR036849 -
Cpe01g01391 1561 Pfam alpha/beta hydrolase fold 1309 1417 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01391 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - csv:101217012 1809.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01391 Cpe-Chr1:8368472 Cpe04g01514 Cpe-Chr4:11935412 2.61E-19 dispersed
Cpe01g01391 Cpe-Chr1:8368472 Cpe18g00907 Cpe-Chr18:8119700 3.92E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1016 . . . . . . . . Cmo04g01638 . . . Car04g01619 . . . Cpe01g01391 Bhi07g01424 . . . . . . Cla05g02365 Cam05g2535 Cec05g2564 Cco05g2603 Clacu05g2531 Cmu05g2391 Cre05g2507 . . . . Lsi04g00326 . Chy10g01084 Cme10g00326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01391 Cpe_Chr01 FPKM 38.670162 38.186752 91.921555 94.129227 0.820639 1.488246 0.841622 0.199603 0.35602 0.355926