Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01393 ATGGACAATTCCATCAGCTGTTCGCATAGCATGTTTTCAGATATGAGATTTGGCGAGACGACTCTCACCAGTATGCCAGTGGCTGTGGTTGAGCCATTTAGCTCTACTGTTTGGGAACAAGCAGCTAATTCCCAAAACATGGGAACTAGCAAGGCCAGTGGCTGTCCAGTTTCTTTGAGCCCTGATATCAGCTGGAACCTATCACATAATATGTTTAAAGGGGGAGTTTATCTACCTCACGGCGTGCTCCCACAGAGCTTGTCTCAACTTCCAGCTGATTCTTCATTTATTGAGCGTGCAGCCAGGCTCTCCTGTTTCAGTGGTGATATTGTTGGCCATTTCAACATTCATGAGCCTCCTATGAGTGTTTCAATCCCTGAGAGATGGGATGAGATTCCACGAAATGGGTTAGGCTTGGTTTCTGGAATTGAAGGACAATCTCAGAGAACTAATGAACATGGAGCTGATGAAAATGGAAGCCCTTTGAAAGTGGATGATCGTGGTAAACAAGCTACTGATGGTTCTTCTGCTAATGAATCTGATGAAGCTGAGTTTAGCGGCGGTGATGGGCCATGTGCGATAGAGGTCACAGCCAACCAAGTTTCTGCCAAGGGCCGGAAAAGGAAAAGAACTGGACAGGTAATGAATAATGACTCTTGTTCTGATCAACCCAATGGACCTCTGCAACAAGCTACTGTTTCAGCTAAGAATGATACTCAAAATCAGCCAAAAGGAGATCAAAATCCAAGCTCAACTGCTAACAAGGCTGCAGGAAAACATGGTAAACAGGCGTCTCAACCTTCAGATCCACCAAAGGAAGAGTATATTCATGTTCGAGCTCGACGGGGCCAGGCGACGAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACCGGAAAGGCGGTGATGCTAGACGAAATCATTAACTATGTCCAATCGCTGCAACGACAAGTCGAGTTCTTATCGATGAAACTCGCTACCGTGAATCCAAGGATGGATATCAACATCGACGGGCTCCTAGCCAAAGATATTCTTCAATCACAAGCTGGTCCATCGTTGACATATATGCCCACCGGTTGTCCCCCGCCTCGTGTTTCTCATCATCGACTTATTCCAAGCGGTTTTCCTGCCATAGGGAGCTCTGAGATGTTAAGGAAAATGAGTTCCCAGATGAATCCAAGGTCTAATGGATTTAAGGAGCCTTCTCAGATAAAGAGTGTGTGGGATGGTGAGCTCCAAAACATTGTGCAGATGAGCTTTGGGATGTCCACTACCCTCAATTGTTTAGAACTCGAAGGATCTGATTCACCAGGCAATACAAAAGTTGCACATTGA 1395 45.95 MDNSISCSHSMFSDMRFGETTLTSMPVAVVEPFSSTVWEQAANSQNMGTSKASGCPVSLSPDISWNLSHNMFKGGVYLPHGVLPQSLSQLPADSSFIERAARLSCFSGDIVGHFNIHEPPMSVSIPERWDEIPRNGLGLVSGIEGQSQRTNEHGADENGSPLKVDDRGKQATDGSSANESDEAEFSGGDGPCAIEVTANQVSAKGRKRKRTGQVMNNDSCSDQPNGPLQQATVSAKNDTQNQPKGDQNPSSTANKAAGKHGKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDINIDGLLAKDILQSQAGPSLTYMPTGCPPPRVSHHRLIPSGFPAIGSSEMLRKMSSQMNPRSNGFKEPSQIKSVWDGELQNIVQMSFGMSTTLNCLELEGSDSPGNTKVAH 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8390205 8393337 + Cp4.1LG01g13230.1 Cpe01g01393 462706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01393 464 Gene3D - 281 354 IPR036638 GO:0046983
Cpe01g01393 464 MobiDBLite consensus disorder prediction 141 155 - -
Cpe01g01393 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 334 IPR011598 GO:0046983
Cpe01g01393 464 SMART finulus 290 340 IPR011598 GO:0046983
Cpe01g01393 464 MobiDBLite consensus disorder prediction 156 172 - -
Cpe01g01393 464 Pfam Helix-loop-helix DNA-binding domain 287 335 IPR011598 GO:0046983
Cpe01g01393 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 353 IPR036638 GO:0046983
Cpe01g01393 464 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 462 IPR024097 GO:0006355
Cpe01g01393 464 MobiDBLite consensus disorder prediction 214 261 - -
Cpe01g01393 464 CDD bHLH_AtBPE_like 274 359 - -
Cpe01g01393 464 MobiDBLite consensus disorder prediction 136 271 - -
Cpe01g01393 464 PANTHER TRANSCRIPTION FACTOR BHLH49 37 462 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01393 Cpe09g00247 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01393 Cpe-Chr1:8390205 Cpe13g00466 Cpe-Chr13:4893153 1.01E-112 dispersed
Cpe18g00815 Cpe-Chr18:7580336 Cpe01g01393 Cpe-Chr1:8390205 4.73E-45 dispersed
Cpe01g01393 Cpe-Chr1:8390205 Cpe09g00247 Cpe-Chr9:1420189 3.19E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48852 PF00010 HLH 4.90E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01393 - - cmax:111488734 897.501