Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01394 ATGCTTAGCCGTATTCATCAATGGAAGCCATTACATTTTTTGAGGAAATGCGGGATACTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCCCGCCTCGAAGCGGAATCCGTCACTCCCTCCTTCGTTCTGGGCCAGAACGACCCAGTTCGTGAGATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCGTATGTTGGTGGATGTAACTTTCGAACTGTAGTTTCTACTTTGAGTGAAACTGTAGTGGACGGCGTTCTTGAGAGTTTGAGTATTCAGAATCCTGATGTTGCTGTGGCATTTTTCTATTTGTTGAGAAATAAGTACGGATTTCGGCATTCTGGGTTCTCCCAGCTTGCCGTTTCTCATATTCTAGCGGGTAAAGGAAGATTCAAGGAGTTGCATTGCGTTATAAAGCAATTGGTTGAGGAGCAAGGGTCGGGTTCTGCATCTTCCTTTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATGGTGTGGTATGGGATATGCTGGCATTTGCGTATTCTAGACATGAAATGATCCATGATGCCCTCTTTGTCATCGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTGAGGCACACTGATGTTATGTGGGATATATGCAATGAGGTCAAAGCTAGTGGAGCTCCTCAGAGTGAATATACTACTTCAATACTTATACACGGCCTATGTGCGCAATCCAAGTTACAAGATGCGATTTCATTCCTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCGTTATGTCAAAGTTTTGCAAAGTGGGGCTAGTAGATGTTGCAAGTGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGAATAGAAGAGGCATTGGCATTGCTCAATGAAATGGAAACTCTACGTTTGAAACCTGATCTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTACAAAGGGCTTACCAACTATATGAACAAATGCGTTTGAAGAGAAATTTTCCTAACTACTTTTCTCAACGTGCAGTACTTTTGGGTTTCTTTGAGAATGGAAATATTTCTGAGGCAAGAAAATATTTTGATGCTTTGACTCATATGGATCTGATAGAGGATGTTATTTTGTTTAATATTATGATTGATGGTTACGTAAGGCTTGGTGATATTTCTGAGGCTATGCAGCTATATTACAGAATGTTTGAAAGGGGGATTACTCCGACTGTTGTCACTTTCAACACTCTTGTCCATGGGTTTTGCAGAAATGGAGACCTAGTGGAGGCTCGAAAGATGTTCAAAATCATTAGGTTGAATGGATTGCTACCCAGTGTAGTAACTTATACTACCCTTATGAATGCGTACTGTGAAGCGGGAAACATGCAGGAAATGTTTGATCTACTCCATGAGATGGAAGCAAATGCTGTTGTTCCAACTCATATAACTTATACTGTACTAATCAAAGGACTCTGCAGACAGAATAAAATGCATGAAGCCCTCCAGTTGCTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCAGATTACATATAATACTATTATCCAATGTTTTTGCAAGGCCAGAGACATTGCAAAAGCTTTCCAGGTTTATAATGAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAATGTACTTATTAGTGGTCTTTGTGTATATGGTGACCTAAAGGATGCTGATCGAATGCTGGTTTCTATGGAGGATCAAAATATTAGCTTGACAAAAGTTGCTTATATGACAATTATTAAGGCACATTGTGCAAAGGGTCAGGTGTCTAAAGCATTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTCATTTCCATCAGAGATTATAGTGCTATCATTAATAGGCTGTGCAAAAGGGGTCTAATTACTGAAGCAAAGTACTTATTTGCTATGATGTTATCTGAAGGTGTAACTCCTGATTCTGAAATCTGCGAGACAATGCTTAATGCTTTCCATCAACATGGTGATAGCAGATGTAGGGATAATATTCCCTCTGTGGCATGTATCAAACTTTATGCCTCAGATAAGCAACGAAAGGAAAGTCATGGCAATGACCCTTGTGGGCTCTCCCAGCTTGGAGGCTGCAGCAGACGGTCTTATAGAGTGGAATTCTCTGAACCTAGAGGGGCATCACTTTCAGAACTCCCGCCTGTATTTGTTAAGTATGGAGGATGGTCGATACTTGAAGGGATTTAA 2298 40.34 MLSRIHQWKPLHFLRKCGILASFSSVILARPSVSAARLEAESVTPSFVLGQNDPVREILTGLNSFGFRAYVGGCNFRTVVSTLSETVVDGVLESLSIQNPDVAVAFFYLLRNKYGFRHSGFSQLAVSHILAGKGRFKELHCVIKQLVEEQGSGSASSFCDLLLNKFRNWDSNGVVWDMLAFAYSRHEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHTDVMWDICNEVKASGAPQSEYTTSILIHGLCAQSKLQDAISFLQDSNEVVGPSIVSINTVMSKFCKVGLVDVASVLLSCLCKVGRIEEALALLNEMETLRLKPDLIVYSILIHGLCKEGFVQRAYQLYEQMRLKRNFPNYFSQRAVLLGFFENGNISEARKYFDALTHMDLIEDVILFNIMIDGYVRLGDISEAMQLYYRMFERGITPTVVTFNTLVHGFCRNGDLVEARKMFKIIRLNGLLPSVVTYTTLMNAYCEAGNMQEMFDLLHEMEANAVVPTHITYTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDQITYNTIIQCFCKARDIAKAFQVYNEMLLHNLDPTHVTYNVLISGLCVYGDLKDADRMLVSMEDQNISLTKVAYMTIIKAHCAKGQVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKYLFAMMLSEGVTPDSEICETMLNAFHQHGDSRCRDNIPSVACIKLYASDKQRKESHGNDPCGLSQLGGCSRRSYRVEFSEPRGASLSELPPVFVKYGGWSILEGI 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8393917 8400612 - Cp4.1LG01g13140.1 Cpe01g01394 462707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01394 765 Pfam PPR repeat 606 634 IPR002885 -
Cpe01g01394 765 Pfam PPR repeat 643 671 IPR002885 -
Cpe01g01394 765 SUPERFAMILY HCP-like 370 590 - -
Cpe01g01394 765 Gene3D Tetratricopeptide repeat domain 221 293 IPR011990 GO:0005515
Cpe01g01394 765 Gene3D Tetratricopeptide repeat domain 294 389 IPR011990 GO:0005515
Cpe01g01394 765 Gene3D Tetratricopeptide repeat domain 598 720 IPR011990 GO:0005515
Cpe01g01394 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Cpe01g01394 765 Pfam PPR repeat family 533 581 IPR002885 -
Cpe01g01394 765 Pfam PPR repeat family 295 337 IPR002885 -
Cpe01g01394 765 Pfam PPR repeat family 394 442 IPR002885 -
Cpe01g01394 765 Pfam PPR repeat family 463 512 IPR002885 -
Cpe01g01394 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Cpe01g01394 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 673 IPR002885 -
Cpe01g01394 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Cpe01g01394 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Cpe01g01394 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Cpe01g01394 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Cpe01g01394 765 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 18 293 - -
Cpe01g01394 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Cpe01g01394 765 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 293 695 - -
Cpe01g01394 765 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 18 293 - -
Cpe01g01394 765 Gene3D Tetratricopeptide repeat domain 390 456 IPR011990 GO:0005515
Cpe01g01394 765 Gene3D Tetratricopeptide repeat domain 528 597 IPR011990 GO:0005515
Cpe01g01394 765 Gene3D Tetratricopeptide repeat domain 457 527 IPR011990 GO:0005515
Cpe01g01394 765 TIGRFAM PPR: pentatricopeptide repeat domain 643 675 IPR002885 -
Cpe01g01394 765 TIGRFAM PPR: pentatricopeptide repeat domain 397 429 IPR002885 -
Cpe01g01394 765 TIGRFAM PPR: pentatricopeptide repeat domain 294 324 IPR002885 -
Cpe01g01394 765 TIGRFAM PPR: pentatricopeptide repeat domain 571 603 IPR002885 -
Cpe01g01394 765 TIGRFAM PPR: pentatricopeptide repeat domain 536 569 IPR002885 -
Cpe01g01394 765 TIGRFAM PPR: pentatricopeptide repeat domain 466 499 IPR002885 -
Cpe01g01394 765 TIGRFAM PPR: pentatricopeptide repeat domain 326 358 IPR002885 -
Cpe01g01394 765 TIGRFAM PPR: pentatricopeptide repeat domain 606 639 IPR002885 -
Cpe01g01394 765 TIGRFAM PPR: pentatricopeptide repeat domain 501 534 IPR002885 -
Cpe01g01394 765 TIGRFAM PPR: pentatricopeptide repeat domain 431 464 IPR002885 -
Cpe01g01394 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Cpe01g01394 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Cpe01g01394 765 Gene3D Tetratricopeptide repeat domain 77 220 IPR011990 GO:0005515
Cpe01g01394 765 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 293 695 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01394 - - - bhj:120081514 917.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01394 Cpe-Chr1:8393917 Cpe04g00896 Cpe-Chr4:8182850 3.68E-41 dispersed
Cpe01g00235 Cpe-Chr1:1332735 Cpe01g01394 Cpe-Chr1:8393917 3.51E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1000 . . . . . . . . Cmo04g01645 . . . Car04g01622 . Sed07g2016 . Cpe01g01394 Bhi07g01446 Tan04g0955 Cmetu04g0673 . . . . Cla05g02374 Cam05g2544 Cec05g2576 Cco05g2615 Clacu05g2543 Cmu05g2402 Cre05g2519 . . . . Lsi04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009359 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01394 Cpe_Chr01 FPKM 13.665838 14.478184 11.456285 12.349609 14.451979 13.830642 14.506473 12.539152 12.102875 14.748771