Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01400 ATGAAGCTGGAAGATCATAAAGATTTTACAGGTCTTCTCAAAGGTAACGAGGATGCCAATCACAAGAATACTGTTGTAGGTCTTGATGATCTTAATGAATTTGACGAAGTTAAAGCCTTTGTGCCATCACTCACTAATTCTTCTAAAGTAGACTTGTTTGAGGAAGACTCGGAGTTATACATGGAAAAGAGTATTGTTGAATGTCAACTTCCTGAACTCATAGTTCGTTACAAAGAAAACAGCTGCAATATTGTGAAGGATATTTGTATTGACGACGGAGTACCTTCTCGGGATAAGCTCTTGTGTGGTAGTAGTAGTTTGGATGAGAAGGCTGTCTGTGTCATTCTCCCTCCTGAGGAAGATTGGAAGGACGAGTTGGCAAGAACGCTGGAGGAAGGAGATATGTTTGCTTCTGACGATTCAGAGCATTCGGAATCTTTTGGCAAAAAGGATTCACCCAATCAAAGCGATTTCGAGGATTTGGCTAGAACACCCGAGGCAGAATATGATGTGGATTATTTTACTGACAATGATATACTAAATCTTCCAATGACAGACTTGTTTACAGAGAGCGTAAAGCCAATGACCAACAATAAGAATGAGCCTAACCCTCAGTCTGAACAGGTTTTGGAAGTCCCTGTTTTGGCACGTGTAGCTGAAGAATCTTATAGTGACACCAGAGAAGCAATATCAGAAGTTGCTTCTTCAGATCTAGCAACTGAAGAGTCAAAAAATAACGATTCTGCGGAGGATATATCATACAATAGTAAAATGGACAAAGGAAACATTACTTTTGATTTCAATTCTTTTGCATCCACAGCTAGTGATGGACTGGAGCATTGTGATAATGGTGACTTGAACTCTTCAGCTCCTTCGACCAGTGCCTCGGTGGATTGCCTAGAGACTAGCAGCTCCAACCGCTTAGCTTCAACTGACAAATGTCAAGCACATTGTTACGATTATTGTAGTAACCCGAAACGTATGGAGTATGAAGACTTGCTACGAGTGGAATATGAAGACTCACATAAGGCAGAAGTTGGGAATTCTGATAGTCATTTAGTTTCAAGCCAAGTTCAACATGGCGTAGGTGAAGCAAGTGTCTCTTCTATGGTATCTTTGGGGAGTCTGTTGTCCAATTCAGGCCATATAGGTTACTCCGGCAGCATCTCTCGTCGTTCCGATAGCAGCACGACCAGCACCCGTTCCTTTGCCTTTCCCATATTACAATCCGAATGGAACAGTAGTCCTGTTAGAATGGCTAAAGCTGATCAGAAACATCTACGGAAGCTTCGGGGTTGGAGACAAGGCCTTCTATGCTGTAGATTCTGA 1329 41.99 MKLEDHKDFTGLLKGNEDANHKNTVVGLDDLNEFDEVKAFVPSLTNSSKVDLFEEDSELYMEKSIVECQLPELIVRYKENSCNIVKDICIDDGVPSRDKLLCGSSSLDEKAVCVILPPEEDWKDELARTLEEGDMFASDDSEHSESFGKKDSPNQSDFEDLARTPEAEYDVDYFTDNDILNLPMTDLFTESVKPMTNNKNEPNPQSEQVLEVPVLARVAEESYSDTREAISEVASSDLATEESKNNDSAEDISYNSKMDKGNITFDFNSFASTASDGLEHCDNGDLNSSAPSTSASVDCLETSSSNRLASTDKCQAHCYDYCSNPKRMEYEDLLRVEYEDSHKAEVGNSDSHLVSSQVQHGVGEASVSSMVSLGSLLSNSGHIGYSGSISRRSDSSTTSTRSFAFPILQSEWNSSPVRMAKADQKHLRKLRGWRQGLLCCRF 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8421767 8423909 - Cp4.1LG01g13120.1 Cpe01g01400 462713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01400 442 MobiDBLite consensus disorder prediction 136 158 - -
Cpe01g01400 442 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 11 442 IPR040378 GO:0009786
Cpe01g01400 442 MobiDBLite consensus disorder prediction 235 255 - -
Cpe01g01400 442 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 11 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01400 - - - bhj:120081347 628.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01400 Cpe-Chr1:8421767 Cpe09g00236 Cpe-Chr9:1363916 1.92E-73 dispersed
Cpe01g01400 Cpe-Chr1:8421767 Cpe18g00718 Cpe-Chr18:7065424 7.24E-08 wgd
Cpe01g01400 Cpe-Chr1:8421767 Cpe09g00235 Cpe-Chr9:1361187 1.22E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g945 . . . . Bpe13g01395 . . . Cmo04g01650 . . . Car04g01628 . Sed08g1575 . Cpe01g01400 Bhi07g01449 Tan04g0961 Cmetu10g1342 Lac13g0407 Hepe10g1818 . . . . . . . . . Cone13ag0930 Cone19ag0923 Cone6ag0559 Cone9ag0566 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000606 4 19 2 1 2 2 5 2 2 2 2 2 4 2 2 4 2 2 5 2 2 2 2 2 2 2 2 16 5 1 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01400 Cpe_Chr01 FPKM 2.984742 3.156188 3.125587 3.37307 3.700306 2.819217 2.621116 4.361171 3.834725 4.230757