Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01409 ATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTAATCTGCCCGGAGGATTCCTCCGGCGTCTTGTCCGGCGAGTCGCCGGGGTGTTCTTCCGACTTCGATTCGACGGCCTGCGTTGAGGAATCTATCGCCGTCTTCATCAAGGATGAGCGTCGCTTCGTCCCTGATTACGACTGTTTCTCGCGCTTCCAATCTCCATCGCTGGATGCGGCCGCTAGACTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCCTATTACGGTTTTCAGCCTTTGACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTTGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGCCTGTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCTTTACTAGATCTTCAGGTTGAGGGGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAGTTGTTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAATAACGCCGTTCAATTTCATAGCATTCTTTGCTTGCAAGCTCGACCCATCGGGAGATTTCATCGGGTTTCTTATATCAAGAGCAACAGAAATTATAGTATCGAATATCCGAGAGGTAATCTTTCTGGATAACTGGCCATCGTGTATTGCGGCAGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGGGTTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGCGGCCTGAGGAAAGAAAATATCACCGGCTGCTACCGGTTAATGCAAGAGATTGTTCTTGTTAGTAGCCGGAGCAAGTCCCCCAAAATCCTACCCGGCCAGTTTAGAGTGACTGTCCGCACTAGGATGACATCCAGCGACTTATCCTCCTACTCCTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGAGCAGCGTCTGGATAGATGATGACAAAGGTAACACCGAAGAATGA 1002 48.6 MSVSISNCFSNLICPEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCFSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNFIAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSVVNPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLSSYSSSSSSSSSPNKRRKLNQSSVWIDDDKGNTEE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8468168 8472018 - Cp4.1LG01g12990.1 Cpe01g01409 462722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01409 333 Pfam Cyclin, N-terminal domain 43 172 IPR006671 -
Cpe01g01409 333 PANTHER CYCLINS 26 319 IPR039361 -
Cpe01g01409 333 SMART Cyclin_C_2 175 310 IPR004367 -
Cpe01g01409 333 SUPERFAMILY Cyclin-like 34 172 IPR036915 -
Cpe01g01409 333 PANTHER CYCLIN-D1-1 26 319 - -
Cpe01g01409 333 MobiDBLite consensus disorder prediction 319 333 - -
Cpe01g01409 333 CDD CYCLIN 73 165 IPR013763 -
Cpe01g01409 333 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Cpe01g01409 333 Gene3D - 47 239 - -
Cpe01g01409 333 MobiDBLite consensus disorder prediction 295 333 - -
Cpe01g01409 333 Pfam Cyclin, C-terminal domain 175 276 IPR004367 -
Cpe01g01409 333 SMART cyclin_7 78 166 IPR013763 -
Cpe01g01409 333 SUPERFAMILY Cyclin-like 157 280 IPR036915 -
Cpe01g01409 333 MobiDBLite consensus disorder prediction 295 318 - -
Cpe01g01409 333 Gene3D - 56 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01409 Cpe-Chr1:8468168 Cpe11g00745 Cpe-Chr11:5841771 6.28E-148 dispersed
Cpe01g00261 Cpe-Chr1:1491609 Cpe01g01409 Cpe-Chr1:8468168 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01409 K18810 - csv:101209417 561.222