Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01410 ATGGGCCTCATGGGCCTCAGGCTGCTTGCGACTGAAGGAAGAGAAGGCAGTTCGGAATCGAAACCTCTCGTTCCATTTCCGAAATGTTCAGGAACGGAGAAAACCGCTGGTGATGATCGATCCAAAATGACGACCAAACTTCTTGCGAATCGGTTTCGGCACCTATTCTTCACATCAACAGGGACAACCAGAGCCACCTCCTTTACTATTACATCTTCTTCTTCCCCATTTCGATGCATATTTTTTTCTAAGTTTTCATCATCGTCACCGTCTTCTTCCGGCATCGATTGCTCTACTGCTGCGCCTCCGGATATTGCCGATGTTCCTGAAGAAGTTGTTGAGGAATTATTCGATGCCGTCTCTCCTGCTGCTGCGAATTCTTCGGCTGTCGAGCTTGTGTTTCCTTCTCTTCTCCAGCCTCGCGTTGTTGTCTATGACGGTGTATGCCATCTCTGCCACCGCGGTGTGAAGTGGGTTATAAAGGCGGACAGATATAAGAAGATCAAATTTTGCTGCCTTCAGTCCAAAGCTGCTGAACCATACTTGAGACTGAGTGGTCTAGACAGAGAGGATGTTTACCGTCGCTTTGTGTTCATTGAGGGCCATGGTTCATACTACCAAGCTTCTACCGCTGCTCTGAAGGTCTTGTCCTATTTGCCTCTCCCCTACTCAGCTTTGAGCGCATTCTTGATAATCCCGACTCCTCTTAGAGATGCTATCTATGACATTGTTGCCAAACATCGCTACGACTTGTTTGGAAAAGCCGAAGACTGCTTGGTTTTGCAAGAGGAAGAGCTTCTCGAGCGTTTCATTGATAGGGAGGAACTGCTCGATCAACGCCATCGGTAA 849 47.94 MGLMGLRLLATEGREGSSESKPLVPFPKCSGTEKTAGDDRSKMTTKLLANRFRHLFFTSTGTTRATSFTITSSSSPFRCIFFSKFSSSSPSSSGIDCSTAAPPDIADVPEEVVEELFDAVSPAAANSSAVELVFPSLLQPRVVVYDGVCHLCHRGVKWVIKADRYKKIKFCCLQSKAAEPYLRLSGLDREDVYRRFVFIEGHGSYYQASTAALKVLSYLPLPYSALSAFLIIPTPLRDAIYDIVAKHRYDLFGKAEDCLVLQEEELLERFIDREELLDQRHR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8473939 8477180 + Cp4.1LG01g13040.1 Cpe01g01410 462723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01410 282 Pfam DCC1-like thiol-disulfide oxidoreductase 143 254 IPR007263 GO:0015035
Cpe01g01410 282 PANTHER THIOL-DISULFIDE OXIDOREDUCTASE DCC-RELATED 72 280 - -
Cpe01g01410 282 MobiDBLite consensus disorder prediction 11 41 - -
Cpe01g01410 282 PANTHER THIOL-DISULFIDE OXIDOREDUCTASE DCC 72 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01410 - - - csv:101209995 343.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01410 Cpe-Chr1:8473939 Cpe03g01149 Cpe-Chr3:9434093 9.60E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g775 . . . . . . . . . . . . . . . . Cpe01g01410 Bhi07g01712 . . Lac13g0234 . . . . . . . . . . . . . . . . Chy10g00931 . . . . . . . . . . . . Cma04g01593 . Car04g01639 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012782 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01410 Cpe_Chr01 FPKM 12.144562 12.071851 12.556655 13.329141 15.386427 16.071768 15.282755 6.177933 7.443205 6.998398