Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01415 ATGGCTAGAACCCCTGTTTTCTCCCGCCGGCGAAGGTCCGATCAAATCGACGGTTTAGATCGCTTCCCCATCTCTGATTCCGAGGTCCATGTTCTTGCCGTTGATGACAGCCTCGTCGACCGTACAGTAATTGAGCGTCTCCTCCGCCTCACCGCTTGCCGAGTTACTGCAGTGGATAGTGGAATTAGAGCTCTACAATATCTCGGATGGCAAGATGAACCTAATTCCCAAGTTGGTTTTGATGGGTTGAAGGTTGATATGATTATCACCGATTACTGCATGCCCGGAATGTCAGGCTATGAATTGTTGAAGAAAATCAAGGAATCTTCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAAAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAGCGGCTCCGGGAATATATGGTGGGGGACGAAAAGATTGGAAGTGAAACAAGTGGGAACAACAAAAGGAAGCTACGAGAACCGTGTGATGAAGCCTCATCATCACCGTCCATTTTATCACCCGCACCATCTTCTGATTCGTCTCCATCACCGTCAGATTCGGTTCAATCCATCACCCCATCATCGTCAGAGCCATCTTCTCCGACGTCCACTCCTCAATCGGACGACTCTAAATGA 687 48.76 MARTPVFSRRRRSDQIDGLDRFPISDSEVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGWQDEPNSQVGFDGLKVDMIITDYCMPGMSGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKIGSETSGNNKRKLREPCDEASSSPSILSPAPSSDSSPSPSDSVQSITPSSSEPSSPTSTPQSDDSK 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8503744 8505145 + Cp4.1LG01g13060.1 Cpe01g01415 462728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01415 228 SMART REC_2 29 154 IPR001789 GO:0000160
Cpe01g01415 228 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160
Cpe01g01415 228 MobiDBLite consensus disorder prediction 163 228 - -
Cpe01g01415 228 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160
Cpe01g01415 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 227 IPR045279 GO:0009736
Cpe01g01415 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 11 227 - -
Cpe01g01415 228 CDD REC_typeA_ARR 31 153 - -
Cpe01g01415 228 SUPERFAMILY CheY-like 29 154 IPR011006 -
Cpe01g01415 228 MobiDBLite consensus disorder prediction 163 180 - -
Cpe01g01415 228 MobiDBLite consensus disorder prediction 183 228 - -
Cpe01g01415 228 Gene3D - 29 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01205 Cpe-Chr1:7200609 Cpe01g01415 Cpe-Chr1:8503744 1.75E-49 dispersed
Cpe01g01415 Cpe-Chr1:8503744 Cpe19g00016 Cpe-Chr19:135237 6.46E-38 dispersed
Cpe01g00267 Cpe-Chr1:1524322 Cpe01g01415 Cpe-Chr1:8503744 3.07E-94 wgd
Cpe01g01415 Cpe-Chr1:8503744 Cpe18g00823 Cpe-Chr18:7635924 9.79E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48855 PF00072 Response_reg 2.20E-21 CL0304 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01415 K14492 - csv:101209506 333.183