Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01416 ATGCCTTTCCTGCTTCAGCTTCAGCTATGGCAGCTTCATCTCTTCCTCTTCTTCCTCTCTGTTTCTTCTGTTTGTTATTGCCAACTCACTCCCCCTCAAAATATCCAAACTTTCTACCCTTCCCCATTTATTCCTCAACCACCGTCGCCATTGTCCTCTCTTGTGCAACTGCCGCCATCGTCCTCACTTAAGCATCGGCTGCCATCGTCGTCGTCCACGTTAACGAGGACCATAACGACGGCTGTGGCTGTCACTGCAGTGAGTACGGCTCTGATTTCCACGTTGTTCTTCTTCTTGATCCAGAGATATCTGATCAGAAGAAAACAAAATGTAGAGGTGGCAAATTCGAGTCCGGGTCCGGGACCGATCTTGCAGCCGGTGGTTGCTCGGAGTGAATCTTCGTGTCCTGATGGGAATCTTAAAGGGTATATTGTGGATGAAAATGGATTCGATGTGATTTATTGGAAGAGACTTGAAAGAAGGAAATCCAGTAATAGCTTTGATTGGAGTGATGGACAAGAAAATGTTATGAAAAATCGAAGCAAGAAGAGGAAGCCTGTTCAAGAAGTTCCTCTGCTTCGAGGAAACGCTTCGCCGGAAGATGAAGAACCCAGTTGGATTACATCTCCTTCGCCGCCTCAGATTAACCACCACCCTCCGCCGTTTACTGGGAATTCTGTTCAGGCAGTTGGAAAACCATCAAGTAGTTCAATTCATTCATCAATAGAGCATTCACAATCTCTGAGGGCCGTTTCTCACGACAAAAGCTCTGTTCCAACATCGCCGCCGCCAGTTCCAGTCAAGACCAATACAAGACCACCACCGCCACCACCTCCCATCCCAGTCAAGACCAATTCAAGACTGCCCCCACTGCCTCCTATTCAAGTCCAGACCAATGCAGCACCACCACCGCCGCAGCCGCCCAATGCCGGCGCTTCAAAAGGGGGTAATTTCTCTGGCGTGGCTTCATCAGTCGAGAATGGTCAGGTTAAATTCATACCCCTGCATTGGGATAAAGTGAACACCGCAAATGCCGATCATTCTATGGTTTGGGATAAAATGAACGGCGGTTCTTTCAAATTTGATGGGGATCTTATGGAAGCTCTGTTTGGATATGTCGCAACCGACCGGAAATCCCCCCGGGACGAGGCTAGTTCTTCAGCAAACGCCTTTGGCCGGAACTCAGGGCCGTCGCAAACTTTCATTCTTGAACAGAAAAAATCTCAGAACATAGCCATTATAATCAAGTCCTTGACCATTCCTCGCAACGAAATCCTCGATGCGCTGAACGAAGGTCAAGGCCTCGAAACAGACAATCTTGAAAAACTCACAAGAATTGCTCTGACCCAAAAAGAAATTTCCCAAATTCTTGAGTATGAAGAAGACCCCCAGAAGCTTGCTGATGCTGAATCTTTCCTTTACCATCTTCTCACATCGGTTCCAACAGCCTTTACGCGTTTCAACGCCATGCTTTTCCGATTGAATTTCAGCTCCGAGATTCTCCATCTCAAGAAATGTCTACGAACTCTGGAATCTGCCTGCAAGGAGCTTAGAACTCGAGGGTTGTTTTTAAAATTGCTTGAAGCAATTCTCAAAGCTGGGAATCGGCTGAATGCAGGAACTGCAAGAGGAAATGCGAGAGCTTTCAACCTTACAGCTCTCCGGAAGCTCTCTGATGTTCAAAGCACTGATGGGAAAACCACTTTGCTTCACTTTGTGGTGAAGGAAGTCATCAGAACAGAAGGGAAAAAGTGTGTTTTAAACAGGAACAAGAGCATGAGCCGTAACAACAGCAGCAATAGCAGTGAGAACAGCTTTAGCAGCCGTGAAAGTTCGACTTCGAAGGAGGACGCAGTAAAGGAATATATGAAGTTGGGACTGCCAACGGTGGGAGGTCTAAGCGCTGAGTTCTCTAATGTAAGGAAAGCGGCGGCAATCGACTACGAGAGTGTTGCCAAGGCTGCGTCATCTCTGACTAGCCCAACTCTAGAAATCCGGCAGCTTTTGATTCAAATTGGGAACAATGGAGGTGGGTTTACAAAGGAAATGAGAGGGTTTCTTGAGGCAGCAGAGGATGAGCTGAAGGTGGTGAGAGAAGAACAGACGAGAGTGATGGAGCTAGTGATGAAGACAACAGAGTATTATCAGGCTCAAAGTTCAAAAGATAATGAAGCAAATAGGCTTCAATTATTCATCATAGTGAAAGATTTCCTAGAAATGGTAGATCGGGTATGTATTGAAATTGCCCGAGAACTCCAGAGGAGATCGTCGGCCGTCGATGTGGGTTCGTCACAGGTGAGATCAAAGACTCTCTTCCCTAGCTTGCCGGAAAATTTTATGTCGGACAAGTCCAAAGGCAGTTCTAGTGATTCAGATGAGGAATTCTGA 2388 46.78 MPFLLQLQLWQLHLFLFFLSVSSVCYCQLTPPQNIQTFYPSPFIPQPPSPLSSLVQLPPSSSLKHRLPSSSSTLTRTITTAVAVTAVSTALISTLFFFLIQRYLIRRKQNVEVANSSPGPGPILQPVVARSESSCPDGNLKGYIVDENGFDVIYWKRLERRKSSNSFDWSDGQENVMKNRSKKRKPVQEVPLLRGNASPEDEEPSWITSPSPPQINHHPPPFTGNSVQAVGKPSSSSIHSSIEHSQSLRAVSHDKSSVPTSPPPVPVKTNTRPPPPPPPIPVKTNSRLPPLPPIQVQTNAAPPPPQPPNAGASKGGNFSGVASSVENGQVKFIPLHWDKVNTANADHSMVWDKMNGGSFKFDGDLMEALFGYVATDRKSPRDEASSSANAFGRNSGPSQTFILEQKKSQNIAIIIKSLTIPRNEILDALNEGQGLETDNLEKLTRIALTQKEISQILEYEEDPQKLADAESFLYHLLTSVPTAFTRFNAMLFRLNFSSEILHLKKCLRTLESACKELRTRGLFLKLLEAILKAGNRLNAGTARGNARAFNLTALRKLSDVQSTDGKTTLLHFVVKEVIRTEGKKCVLNRNKSMSRNNSSNSSENSFSSRESSTSKEDAVKEYMKLGLPTVGGLSAEFSNVRKAAAIDYESVAKAASSLTSPTLEIRQLLIQIGNNGGGFTKEMRGFLEAAEDELKVVREEQTRVMELVMKTTEYYQAQSSKDNEANRLQLFIIVKDFLEMVDRVCIEIARELQRRSSAVDVGSSQVRSKTLFPSLPENFMSDKSKGSSSDSDEEF 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8508238 8512331 + Cp4.1LG01g13030.1 Cpe01g01416 462729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01416 795 Pfam Formin Homology 2 Domain 325 742 IPR015425 -
Cpe01g01416 795 SMART it6_source 322 756 IPR015425 -
Cpe01g01416 795 MobiDBLite consensus disorder prediction 295 310 - -
Cpe01g01416 795 SUPERFAMILY Formin homology 2 domain (FH2 domain) 274 753 - -
Cpe01g01416 795 MobiDBLite consensus disorder prediction 588 614 - -
Cpe01g01416 795 PANTHER FORMIN-LIKE PROTEIN 4 10 791 - -
Cpe01g01416 795 PANTHER FORMIN-RELATED 10 791 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cpe01g01416 795 MobiDBLite consensus disorder prediction 259 288 - -
Cpe01g01416 795 Gene3D Formin, FH2 domain 343 765 IPR042201 -
Cpe01g01416 795 MobiDBLite consensus disorder prediction 175 189 - -
Cpe01g01416 795 ProSiteProfiles Formin homology-2 (FH2) domain profile. 322 767 IPR015425 -
Cpe01g01416 795 Coils Coil 687 707 - -
Cpe01g01416 795 MobiDBLite consensus disorder prediction 165 321 - -
Cpe01g01416 795 MobiDBLite consensus disorder prediction 772 795 - -
Cpe01g01416 795 MobiDBLite consensus disorder prediction 589 612 - -
Cpe01g01416 795 MobiDBLite consensus disorder prediction 220 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01416 - - - mcha:111019114 916.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01416 Cpe-Chr1:8508238 Cpe11g00749 Cpe-Chr11:5960845 2.61E-100 dispersed
Cpe01g00268 Cpe-Chr1:1527777 Cpe01g01416 Cpe-Chr1:8508238 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g795 . . . . . Bpe10g00820 . Bma15g00202 Cmo04g01676 . . . . . Sed08g1729 . Cpe01g01416 Bhi07g01666 Tan04g1167 Cmetu03g1719 Lac13g0243 Hepe10g1681 . . Cla05g02507 Cam05g2691 Cec05g2724 Cco05g2759 Clacu05g2694 Cmu05g2548 Cre05g2663 . . Cone6ag0623 Cone9ag0638 Lsi04g00506 Csa05g02377 Chy10g00942 Cme10g00485 . . . . Bpe11g01744 . . . . . . Cma04g01601 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007048 1 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01416 Cpe_Chr01 FPKM 12.290625 13.925261 7.694551 7.800039 8.851604 8.989633 9.158675 4.629608 4.141215 3.796534