Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01424 ATGCCGTCTCACGCGGATCTGGACCGTCAGATCGAGTATCTGATGGAGTGCAAGCCGTTGCCGGAAGCGGATGTGAAAATACTGTGCGATCAGGCGAGAGCGATTCTGGTAGAGGAGTGGAACGTGCAGCCGGTTAAGTGTCCGGTGACGGTGTGCGGTGATATTCATGGCCAATTTTACGATCTCATTGAACTGTTTCGGATAGGAGGCCATCGCGGGTACTACTCTGTCGAGACGGTTACTCTTCTCGTGGCTCTGAAGGTTCGTTATAGAGACAGAATTACTATCTTGAGGGGTAATCACGAGAGCCGACAAATAACTCAAGTGTATGGCTTTTATGATGAATGCTTGCGAAAATATGGAAATGCCAATGTCTGGAAACACTTCACCGATCTGTTCGATTACCTCCCTCTTACAGCTCTAGTTGAGAGTCAGGTTTTCTGTTTGCATGGAGGGCTTTCTCCATCCTTGGATACCTTGGATAACATTCGCTCATTGGACCGTATACAGGAGGTCCCCCATGAGGGGCCGATGTGTGATCTCTTATGGTCGGATCCAGACGACCGGTGTGGATGGGGAATATCTCCACGTGGGGCTGGGTATACATTTGGTCAGGATATAGCTACTCAGTTCAATCATACAAATGGGCTTACTCTTATATCCAGAGCGCATCAACTTGTCATGGAAGGATACAACTGGTGTCAGGATAAGAATGTGGTGACTGTCTTTAGCGCTCCAAATTATTGTTATCGATGTGGAAATATGGCCGCAATTCTGGAAATTGGGGAGAATATGGATCAAAACTTTCTACAATTTGACCCAGCTCCTCGGCAAATTGAGCCAGATGCCACTCGCAAGACTCCTGATTATTTTTTGTGA 879 47.21 MPSHADLDRQIEYLMECKPLPEADVKILCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGHRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALVESQVFCLHGGLSPSLDTLDNIRSLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIATQFNHTNGLTLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDATRKTPDYFL 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8548059 8551290 - Cp4.1LG01g12790.1 Cpe01g01424 462737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01424 292 Pfam Calcineurin-like phosphoesterase 48 225 IPR004843 GO:0016787
Cpe01g01424 292 Gene3D - 2 292 IPR029052 -
Cpe01g01424 292 CDD MPP_PP2A_PP4_PP6 6 276 - -
Cpe01g01424 292 SMART pp2a_7 20 276 IPR006186 GO:0016787
Cpe01g01424 292 SUPERFAMILY Metallo-dependent phosphatases 6 278 IPR029052 -
Cpe01g01424 292 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 292 - -
Cpe01g01424 292 PRINTS Serine/threonine phosphatase family signature 96 120 IPR006186 GO:0016787
Cpe01g01424 292 PRINTS Serine/threonine phosphatase family signature 131 157 IPR006186 GO:0016787
Cpe01g01424 292 PRINTS Serine/threonine phosphatase family signature 216 236 IPR006186 GO:0016787
Cpe01g01424 292 PRINTS Serine/threonine phosphatase family signature 238 254 IPR006186 GO:0016787
Cpe01g01424 292 PRINTS Serine/threonine phosphatase family signature 63 90 IPR006186 GO:0016787
Cpe01g01424 292 PRINTS Serine/threonine phosphatase family signature 160 187 IPR006186 GO:0016787
Cpe01g01424 292 ProSitePatterns Serine/threonine specific protein phosphatases signature. 97 102 IPR006186 GO:0016787
Cpe01g01424 292 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01424 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] - csv:101207312 596.275
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01424 Cpe07g00610 CCT
Cpe01g01424 Cpe07g00610 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01424 Cpe-Chr1:8548059 Cpe07g00610 Cpe-Chr7:4192995 0 dispersed
Cpe01g01424 Cpe-Chr1:8548059 Cpe16g00921 Cpe-Chr16:8540673 3.75E-177 transposed
Cpe01g01424 Cpe-Chr1:8548059 Cpe05g00531 Cpe-Chr5:3154021 2.32E-177 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g809 Blo01g00410 Blo16g01139 Bda01g02171 Bda11g01245 Bpe13g00474 . . . Cmo04g01688 . . . . . Sed08g1883 . Cpe01g01424 Bhi07g01649 Tan04g1154 Cmetu10g0911 Lac13g0253 Hepe10g1691 . . Cla05g02498 Cam05g2682 Cec05g2715 Cco05g2750 Clacu05g2685 Cmu05g2539 Cre05g2654 . Cone19ag0992 Cone8ag0631 Cone12ag0613 Lsi04g00498 Csa05g02387 Chy10g00950 Cme10g00475 . . . Bda11g01245 . . Bma01g00073 . . . . Cma04g01610 . Car04g01652 . . Cpe07g00610 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000292 4 4 4 4 5 4 7 4 4 4 4 4 7 4 4 6 4 11 7 4 3 4 4 4 4 4 4 11 3 5 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01424 Cpe_Chr01 FPKM 5.201532 6.463868 5.308502 5.552119 4.14582 4.896618 3.938326 13.753502 14.436841 14.927273