Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01432 ATGATTCTGTCAATCCCACCAAATGGACAGTCTATTCCGGTGGAAATCAAGCATGAGACATTCCATGCCCCTCAAAGTCGGCTTCTTCACTTGCTGAGCGACTGTACTGATTTGTCGAGGCTCAAGCAAATACACGCTCAGGCACTTCGCACCTTCTCCACCCACAAATCTTCTCTCTTCCTCTTTAGCCGAATTCTTCACGTTTCTTCATTAACTGATTTTGAGTATGCCTTGCGTGTTTTTGATCAAATCGATAGCCCTAATTCGTTCATGTGGAACACTCTAATCGGAGCCTGTGCACGGAGCTTGGACCGGAAAGAGCAGGCGAATAAACTCTTCTACAGAATGTTAGAAGAAGGCTCAGTTGAACCAGATAAACATACTTTTCCTTTTCTTCTTAAAGCGTGTGCTTACAGCATAATTAGCGCTTGTGCTGGTATTGGAGCTTTATCTCTGGGGATGTGGTCTCATGCTTATGTGTTGAGGAAGACTGGTGGCGCTATGGCCGGTGAGGTCCTGATCAACTCCTCACTGGTGGATATGTACAGCAAGTGTGGTTCTTTGAGTATGGCTCAGCAGGTCTTTGAGACAATGCCCAAACATGACCTGAATTCATGGAATTCAATGATTTTAGCGTTTGCCATGCATGGACGGGCGGAAGCTGCCTTGGGATGTTTCTCTCGGCTGGTTGAAACGGAGAAGTTTCTGCCCAACTCTGTCACGTTTGTAGGTGTTCTTAGTGCATGTAACCACAGAGGTATGGTTGCTGAAGGCCGGAAATATTTTGATATGATGGTTAATGAATACAAGATTGTACCCCGGTTGGAGCACTATGGATGCCTTGTTGATCTCCTATCACGCTCCGGTTTCATTGATGAAGCTTTGGAGTTGGTGACAAATATGCATATAAAACCAGATGCAGTGATCTGGAGGACTCTTCTTGATGCTTGTTACAAGCAGAATGCTGGCGTTGAGCTGAGTGAAGAAGTGGCATTACAGATTCTTCAATCTGAAACAACAGCTTCTAGTGGTGTTTATGTGCTGTTGTCAAGAGTCTATGCTTCGGCACACCGGTGGAACGATGTCGGGTTAGTTAGGAAGGCGATGGCCGACAAGGGTGTGGCAAAAGAGCCTGGCTGCAGTTCGATAGAAATAGATGGTGTTAGCCATGAGTTTTTTGCAGGAGACACATCTCACCCCAAGATAAAAGAGATCTATGCTGTTATTGATTTGATCGAAGAAAAACTACAGAAGCATGAATCTGAGTGA 1269 45.23 MILSIPPNGQSIPVEIKHETFHAPQSRLLHLLSDCTDLSRLKQIHAQALRTFSTHKSSLFLFSRILHVSSLTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQKHESE 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8590827 8592859 - Cp4.1LG01g12780.1 Cpe01g01432 462745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01432 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 123 IPR002885 -
Cpe01g01432 422 Pfam PPR repeat 176 201 IPR002885 -
Cpe01g01432 422 Pfam PPR repeat 277 301 IPR002885 -
Cpe01g01432 422 Pfam PPR repeat 205 230 IPR002885 -
Cpe01g01432 422 Pfam PPR repeat 240 267 IPR002885 -
Cpe01g01432 422 PANTHER OS01G0913400 PROTEIN-RELATED 21 138 - -
Cpe01g01432 422 PANTHER BNAC04G18690D PROTEIN 139 417 - -
Cpe01g01432 422 Coils Coil 402 422 - -
Cpe01g01432 422 Gene3D Tetratricopeptide repeat domain 27 171 IPR011990 GO:0005515
Cpe01g01432 422 PANTHER BNAC04G18690D PROTEIN 21 138 - -
Cpe01g01432 422 Pfam E+ motif 390 409 IPR046849 -
Cpe01g01432 422 Pfam PPR repeat family 87 137 IPR002885 -
Cpe01g01432 422 Gene3D Tetratricopeptide repeat domain 176 392 IPR011990 GO:0005515
Cpe01g01432 422 Pfam E motif 324 384 IPR046848 -
Cpe01g01432 422 PANTHER OS01G0913400 PROTEIN-RELATED 139 417 - -
Cpe01g01432 422 TIGRFAM PPR: pentatricopeptide repeat domain 205 238 IPR002885 -
Cpe01g01432 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 237 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01432 - - - cmo:103489069 528.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01432 Cpe-Chr1:8590827 Cpe15g00071 Cpe-Chr15:521834 7.71E-76 dispersed
Cpe16g00080 Cpe-Chr16:1597922 Cpe01g01432 Cpe-Chr1:8590827 1.99E-08 transposed
Cpe01g00288 Cpe-Chr1:1638678 Cpe01g01432 Cpe-Chr1:8590827 5.40E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g836 . . . . . . Bma14g01744 . Cmo04g01697 . . . . . . . Cpe01g01432 Bhi07g01635 . . . . . . Cla05g02489 . . . . . . Cone13ag0987 . . . Lsi04g00486 . Chy10g00959 Cme10g00466 . Blo11g00874 . . . . . . . . . Cma04g01619 . Car04g01661 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012298 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 0 0 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01432 Cpe_Chr01 FPKM 25.046633 27.584341 12.833452 11.636249 21.524717 24.307217 19.859589 17.038498 18.036318 18.268841