Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01446 ATGGCTATGCAAACTGGAGTAGGCCTTTCGAAGATTCTGATTCTTGTTGGAGCTGGATACTCTAGTACGATCCTGCTTAAGAATGGTAAATTATCGGATGTGTTGGGTGAACTTCAGTCCTTGGTGAAGGGCTTAGAGAAGTCTGGGGAACAATATGTGGGTGATTCTGACTACTCTGATGCCATTGCTGCTCAGGTGCTGATAAAATATATGCCTTTTAAAGAGGGGTTTTCATTCTCAGACCTTATGTATGTTACAAAGCGCAATATGGCTAATGCTGTCTCAAACTTAACTAAACATTTGGAGCACGTATCAGAGGCCCTTGCTGCAACAAAGAGGCATTTGACGCAGCGGATTGAGAACTTGGATGATAAGATGTTGAAGCAGAATGAACTCTCGAAATTGATCAAAGAAGATGTAGCAGAAGTTCAAAAATCTCTTTCTGGCATCGACTTTGACTTGGCTCAGTTGCAAAACATGGTTTCTGGTTTGGATGGGAAACTATCTTCTCTTGAATATAAGCAGGAACTTGCAAATGTTGGTGTATTGTACTTGTGCAACTTTGTTGATGGAAAGCAAGCGAAAATGTCTGAAACTGTGAAGGAGCAGCTTAAACTTCCAGGCAGGACTCAGGGTCTGCTGACGCATCTGGAAACTCCTAATCTGAAGGGTCTTAAAGAACTTACTGATACGCTTTCACGAGATTTTACAGAAGGCCAACCAAGAGCCCTTCTCAGGTCCGCATCAACTAGATGTTAA 759 42.29 MAMQTGVGLSKILILVGAGYSSTILLKNGKLSDVLGELQSLVKGLEKSGEQYVGDSDYSDAIAAQVLIKYMPFKEGFSFSDLMYVTKRNMANAVSNLTKHLEHVSEALAATKRHLTQRIENLDDKMLKQNELSKLIKEDVAEVQKSLSGIDFDLAQLQNMVSGLDGKLSSLEYKQELANVGVLYLCNFVDGKQAKMSETVKEQLKLPGRTQGLLTHLETPNLKGLKELTDTLSRDFTEGQPRALLRSASTRC 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8663789 8671681 - Cp4.1LG01g12590.1 Cpe01g01446 462759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01446 252 Pfam Protein of unknown function (DUF1664) 62 175 IPR012458 -
Cpe01g01446 252 Coils Coil 105 132 - -
Cpe01g01446 252 PANTHER OS05G0182700 PROTEIN 1 66 - -
Cpe01g01446 252 PANTHER OS05G0182700 PROTEIN 70 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01446 - - - mcha:111019198 409.453
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01446 Cpe09g00156 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01446 Cpe-Chr1:8663789 Cpe05g01408 Cpe-Chr5:9896114 6.94E-47 dispersed
Cpe01g01446 Cpe-Chr1:8663789 Cpe09g00156 Cpe-Chr9:907771 7.52E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g858 . Blo16g01130 . Bda11g01232 Bpe13g01429 . . . Cmo04g01713 Cmo18g01196 . Cma18g01171 . Car18g01080 . Cpe09g00156 Cpe01g01446 . . . . . . . . . . . . . . Cone13ag0977 Cone19ag0969 . . . . . . . . . Bda11g01232 . . . Bma06g00661 . . . Cma04g01635 . Car04g01676 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004024 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01446 Cpe_Chr01 FPKM 7.930256 7.214531 14.82193 14.168084 54.948368 56.900715 59.247547 14.567361 18.294476 15.565625