Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01447 ATGGTAGCACCCACGAGCAGAGCTATGCTTGGGGTTCTGCTAACATTATCCTTGGTGGCTACTGCATATGCTGACATTGGAAACTTCGATGATTACTGGAAATCACGCGCCGCCAAGGCTGAGAAAGCCGCCGCCAAGGCCTTCGACCCTAATCCAGAGAACGTCACCGACATCCTCAATGCTGAAGTTGAGCAGGAATTGAGCGGAAGCAATGATACGAGAAGGAATTTGAAGAGATATAAAGGGCCATGTCTAGCCACTAATCCCATTGACCGGTGCTGGAGATGCGACCCCAATTGGGCAAAAAACAGGAAGAAGCTGGCCGATTGTGTTCTGGGTTTTGGCTGGAAGACCATCGGCGGGAAGTTGGGTCCATTCTACGTGGTGAACGATTCGTCGGACTCGGATATCATGGAACCAAAACCTGGGACCCTCCGACATGCTGTGATCCAAAAGGGGCCGTTGTGGATCACATTCTCAACCAACATGGCCATTAGGCTAACTCAGGAGCTCATCGTGTCAAGCGACAAGACCATAGATGCAAGAGGCGCTAACGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTATGTACAAAATGTGATCATCCATGGGCTTCGTATCCATCACATCGTCATGGGTAGCGGCGGAATGATCAGGGACGCTGTGGACCATGTGGGTTTGAGGACAATGAGTGACGGCGATGGCATTTCAATTTTCGGTTCCTCCAACATTTGGATTGACCATGTTTCCATGTCCAATTGTCAAGATGGTCTAATCGATGCCATCATGGGATCCACTGCCATCACCATATCCAATAGCCATTTCACTCACCACAATGATGTGATGCTGTTCGGAGCAAGCGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTGGCATTCAATCACTTTGGTCAAGGGTTGGTGCAGAGGATGCCAAGGTGCCGATGGGGGTTCTTCCATGTCGTCAACAATGACTACACTCATTGGCTTATGTATGCCATAGGTGGTAGCCAGCATCCCATCATTATCAGCCAGGGCAATCGATTCATTGCTCCTCCAAATGTAAATGCTAAAGAGGTGACAAAGAGAGAGTACTCGCCGGAGAGTGTGTGGAAGACGTGGACATGGAGATCAGAGGGAGACTTGATGATGAACGGAGCATTCTTTGTTACCTCCGGCGACCAGAGGAAGAAACGACCTTTCTCAAAGATGGATATGATCTCGTACAGAGAAGGGACATACGTTACCAGAATGACACGTATGTCAGGTGCGCTAGCCTGCTTCATCGGCAGACCATGCTAA 1314 49.24 MVAPTSRAMLGVLLTLSLVATAYADIGNFDDYWKSRAAKAEKAAAKAFDPNPENVTDILNAEVEQELSGSNDTRRNLKRYKGPCLATNPIDRCWRCDPNWAKNRKKLADCVLGFGWKTIGGKLGPFYVVNDSSDSDIMEPKPGTLRHAVIQKGPLWITFSTNMAIRLTQELIVSSDKTIDARGANVQIAYGAGITLQYVQNVIIHGLRIHHIVMGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNIWIDHVSMSNCQDGLIDAIMGSTAITISNSHFTHHNDVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPIIISQGNRFIAPPNVNAKEVTKREYSPESVWKTWTWRSEGDLMMNGAFFVTSGDQRKKRPFSKMDMISYREGTYVTRMTRMSGALACFIGRPC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8663789 8666488 + Cp4.1LG01g12640.1 Cpe01g01447 462760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01447 437 PANTHER PECTATE LYASE 18-RELATED 12 437 IPR045032 GO:0030570
Cpe01g01447 437 Pfam Pectate lyase, N terminus 26 77 IPR007524 GO:0030570
Cpe01g01447 437 Pfam Pectate lyase 172 353 IPR002022 -
Cpe01g01447 437 Gene3D - 87 430 IPR012334 -
Cpe01g01447 437 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Cpe01g01447 437 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Cpe01g01447 437 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Cpe01g01447 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Cpe01g01447 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Cpe01g01447 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Cpe01g01447 437 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Cpe01g01447 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Cpe01g01447 437 PANTHER PECTATE LYASE 12 437 - -
Cpe01g01447 437 SUPERFAMILY Pectin lyase-like 88 428 IPR011050 -
Cpe01g01447 437 SMART amb_all 162 359 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01447 Cpe-Chr1:8663789 Cpe04g00074 Cpe-Chr4:715832 0 dispersed
Cpe02g00876 Cpe-Chr2:6145392 Cpe01g01447 Cpe-Chr1:8663789 0 transposed
Cpe07g00605 Cpe-Chr7:4119676 Cpe01g01447 Cpe-Chr1:8663789 0 transposed
Cpe01g01447 Cpe-Chr1:8663789 Cpe09g01067 Cpe-Chr9:9286487 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01447 K01728 - csv:101206497 772.311