Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01454 ATGACAAGCAATGGGATGGCGTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTTCCTTCTTGCACATCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGAAAACGATCCATGTCGTTTTCAGGGGCGGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTCAACATGGAGCAAGTGAAAACACTAGAGAAAAATTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGGAGGGCTCGGTGGAAGACTAAGCAGCTAGAGAAAGACTACGATCTTCTCAAGAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCAGAACCAAAAGCTTCAAGCAGAGATAATGGGACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGGTCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATTAAATTGGACATCTCAAGAACACCTGCCATCGACAGCCCTCATCAGCATCAGCACCCAACAAACAGGCCTCTTTTTCCCACGTCTTCCTTGAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCAGACCCACCAAAGCAACTTGATAACAACAACCACCACCACCACCACCACCATCATCATCAAATGCCCAAAGAAGAAAACACCAGCTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 918 44.23 MTSNGMAFFPANFMLQTSHEDHDHHHHSSPPSLNPILPSCTSQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMGLKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHPTNRPLFPTSSLRPPALAQLFQTSSRSSDPPKQLDNNNHHHHHHHHHQMPKEENTSLSNMFCGMDDHSGFWPWLEQQHFN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8707125 8717830 - Cp4.1LG01g12610.1 Cpe01g01454 462767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01454 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 305 IPR045224 GO:0003700
Cpe01g01454 305 Pfam Homeodomain 85 138 IPR001356 GO:0003677
Cpe01g01454 305 MobiDBLite consensus disorder prediction 177 285 - -
Cpe01g01454 305 MobiDBLite consensus disorder prediction 217 257 - -
Cpe01g01454 305 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Cpe01g01454 305 Coils Coil 132 180 - -
Cpe01g01454 305 SMART HOX_1 83 144 IPR001356 GO:0003677
Cpe01g01454 305 MobiDBLite consensus disorder prediction 188 210 - -
Cpe01g01454 305 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Cpe01g01454 305 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Cpe01g01454 305 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Cpe01g01454 305 SUPERFAMILY Homeodomain-like 74 142 IPR009057 -
Cpe01g01454 305 MobiDBLite consensus disorder prediction 65 85 - -
Cpe01g01454 305 Pfam Homeobox associated leucine zipper 140 180 IPR003106 GO:0006355|GO:0043565
Cpe01g01454 305 CDD homeodomain 85 141 IPR001356 GO:0003677
Cpe01g01454 305 Gene3D - 77 146 - -
Cpe01g01454 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 305 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01454 Cpe09g00164 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01454 Cpe-Chr1:8707125 Cpe01g02383 Cpe-Chr1:19921644 4.38E-78 dispersed
Cpe01g01454 Cpe-Chr1:8707125 Cpe13g00941 Cpe-Chr13:7932558 6.62E-79 wgd
Cpe01g01454 Cpe-Chr1:8707125 Cpe09g00164 Cpe-Chr9:956347 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48859 PF00046 Homeodomain 3.10E-15 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01454 K09338 - csv:101221595 532.717