Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g01454 | ATGACAAGCAATGGGATGGCGTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTTCCTTCTTGCACATCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGAAAACGATCCATGTCGTTTTCAGGGGCGGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTCAACATGGAGCAAGTGAAAACACTAGAGAAAAATTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGGAGGGCTCGGTGGAAGACTAAGCAGCTAGAGAAAGACTACGATCTTCTCAAGAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCAGAACCAAAAGCTTCAAGCAGAGATAATGGGACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGGTCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATTAAATTGGACATCTCAAGAACACCTGCCATCGACAGCCCTCATCAGCATCAGCACCCAACAAACAGGCCTCTTTTTCCCACGTCTTCCTTGAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCAGACCCACCAAAGCAACTTGATAACAACAACCACCACCACCACCACCACCATCATCATCAAATGCCCAAAGAAGAAAACACCAGCTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA | 918 | 44.23 | MTSNGMAFFPANFMLQTSHEDHDHHHHSSPPSLNPILPSCTSQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMGLKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHPTNRPLFPTSSLRPPALAQLFQTSSRSSDPPKQLDNNNHHHHHHHHHQMPKEENTSLSNMFCGMDDHSGFWPWLEQQHFN | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8707125 | 8717830 | - | Cp4.1LG01g12610.1 | Cpe01g01454 | 462767 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g01454 | 305 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 4 | 305 | IPR045224 | GO:0003700 | |
Cpe01g01454 | 305 | Pfam | Homeodomain | 85 | 138 | IPR001356 | GO:0003677 | |
Cpe01g01454 | 305 | MobiDBLite | consensus disorder prediction | 177 | 285 | - | - | |
Cpe01g01454 | 305 | MobiDBLite | consensus disorder prediction | 217 | 257 | - | - | |
Cpe01g01454 | 305 | ProSitePatterns | 'Homeobox' domain signature. | 115 | 138 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe01g01454 | 305 | Coils | Coil | 132 | 180 | - | - | |
Cpe01g01454 | 305 | SMART | HOX_1 | 83 | 144 | IPR001356 | GO:0003677 | |
Cpe01g01454 | 305 | MobiDBLite | consensus disorder prediction | 188 | 210 | - | - | |
Cpe01g01454 | 305 | PRINTS | Lambda-repressor HTH signature | 111 | 120 | IPR000047 | GO:0003677 | |
Cpe01g01454 | 305 | PRINTS | Lambda-repressor HTH signature | 120 | 136 | IPR000047 | GO:0003677 | |
Cpe01g01454 | 305 | ProSiteProfiles | 'Homeobox' domain profile. | 80 | 140 | IPR001356 | GO:0003677 | |
Cpe01g01454 | 305 | SUPERFAMILY | Homeodomain-like | 74 | 142 | IPR009057 | - | |
Cpe01g01454 | 305 | MobiDBLite | consensus disorder prediction | 65 | 85 | - | - | |
Cpe01g01454 | 305 | Pfam | Homeobox associated leucine zipper | 140 | 180 | IPR003106 | GO:0006355|GO:0043565 | |
Cpe01g01454 | 305 | CDD | homeodomain | 85 | 141 | IPR001356 | GO:0003677 | |
Cpe01g01454 | 305 | Gene3D | - | 77 | 146 | - | - | |
Cpe01g01454 | 305 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 | 4 | 305 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g01454 | Cpe09g00164 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01454 | Cpe-Chr1:8707125 | Cpe01g02383 | Cpe-Chr1:19921644 | 4.38E-78 | dispersed | |
Cpe01g01454 | Cpe-Chr1:8707125 | Cpe13g00941 | Cpe-Chr13:7932558 | 6.62E-79 | wgd | |
Cpe01g01454 | Cpe-Chr1:8707125 | Cpe09g00164 | Cpe-Chr9:956347 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48859 | PF00046 | Homeodomain | 3.10E-15 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g01454 | K09338 | - | csv:101221595 | 532.717 |