Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01458 ATGATCATGGATGGTGAAAATGGGATCCGGAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAGGAAGAACACCCGTGTTCCACCTCCGCAAACAACGGGACGACGACAACAACAACCACGACAACAACCACGACAGCGGTGAATCCGAATCTTCAATCTTCTTCACCTAAGAAGCCACCTCCCAAAAGGGCTACCACCAAAGATCGTCACACGAAAGTCGATGGTCGTGGTCGGAGGATTCGGATGCCGGCCCTTTGCGCTGCTAGGGTTTTTCAGCTTACTAGAGAGCTTGGTCATAAGTCCGACGGTGAAACTATAGAGTGGCTGTTGCAACAGGCGGAGCCGGCTCACGATCAGGGTGGGATTGATGTAACCGACGCTGGAAAGAAACGGCGGCCGGAGAATTCGGAATCGTCATCGGAGAATCCGGTGGGGAATTATTTGATTCAATCGAGTACCGGGTCAATTCCGGCGAGTCACAGCACTCCGGTGCCGGCAACATTTTGGATGGTGACGAATCCGAGCAATCAAGCGAGTGATCCGATGTGGACATTTCCGTCGGTGAGTAACAGCAGCATGTTTAGAGGGGGAAGCGGCGGCGGTGGCGGTGGTGGTGGCGGGGGGTTTCATTTCATGAATCTTCCACCACCAATGGCTCTTTTGCCAACTGGGCAACAAGTGGGGTCAGGGATCGGGGGTGGTAGCGGTGTTCCGGCGACCGACACCCATTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGGACGATACCGGGTGTGTCAATTTCAGAATCTCCGACAAGAGGAGCGGCGGCTGTTCATCAAGGTGGAAATGAGGCTCATGATTCCACTTCTAATCGTGATCAATCATAG 876 52.63 MIMDGENGIRRPNFPLQLLEKKEEEHPCSTSANNGTTTTTTTTTTTTAVNPNLQSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAHDQGGIDVTDAGKKRRPENSESSSENPVGNYLIQSSTGSIPASHSTPVPATFWMVTNPSNQASDPMWTFPSVSNSSMFRGGSGGGGGGGGGGFHFMNLPPPMALLPTGQQVGSGIGGGSGVPATDTHLGMLAALSAYRTIPGVSISESPTRGAAAVHQGGNEAHDSTSNRDQS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8738376 8740054 - Cp4.1LG01g12420.1 Cpe01g01458 462771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01458 291 MobiDBLite consensus disorder prediction 115 161 - -
Cpe01g01458 291 MobiDBLite consensus disorder prediction 125 139 - -
Cpe01g01458 291 ProSiteProfiles TCP domain profile. 68 122 IPR017887 -
Cpe01g01458 291 PANTHER TRANSCRIPTION FACTOR TCP23 11 118 - -
Cpe01g01458 291 MobiDBLite consensus disorder prediction 140 161 - -
Cpe01g01458 291 PANTHER TRANSCRIPTION FACTOR TCP23 128 272 - -
Cpe01g01458 291 Pfam TCP family transcription factor 67 124 IPR017887 -
Cpe01g01458 291 MobiDBLite consensus disorder prediction 1 76 - -
Cpe01g01458 291 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 118 IPR005333 GO:0003700
Cpe01g01458 291 MobiDBLite consensus disorder prediction 264 291 - -
Cpe01g01458 291 MobiDBLite consensus disorder prediction 29 62 - -
Cpe01g01458 291 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 128 272 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01458 - - - cmax:111485089 295.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01458 Cpe-Chr1:8738376 Cpe04g00477 Cpe-Chr4:5425087 8.21E-31 dispersed
Cpe01g01458 Cpe-Chr1:8738376 Cpe18g00799 Cpe-Chr18:7484052 6.73E-33 wgd
Cpe01g01458 Cpe-Chr1:8738376 Cpe20g00029 Cpe-Chr20:145294 3.55E-43 wgd
Cpe01g01458 Cpe-Chr1:8738376 Cpe04g01505 Cpe-Chr4:11884058 2.28E-06 wgd
Cpe01g01458 Cpe-Chr1:8738376 Cpe09g00170 Cpe-Chr9:997754 3.30E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48861 PF03634 TCP 1.00E-27 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01458 Cpe_Chr01 FPKM 4.695977 4.618859 4.83591 5.112211 6.459669 5.791056 7.138451 7.888778 7.596828 7.69283