Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01470 ATGGCTTCCGACCCAGTCGCTTCTGAGCTTTCTTCTGCCTTCGAAAGCCTGGTTTTCATCAACAGAGACATCTCTCCCATCGCACCCCTTTTCTTGGGTTTCGCCTCCGTCATCCGTTCAGCCGACCCTCAATCCCCAAATCCAGAAATTCAAACAATACCCACTTTGCCGAACCGATTCATCTTCTTTAATCCCTTTCCCCCTCAATTGATGGTGATCCATGCCACTCCAAAGGAAGGCCAACCCCCTGCCTCTAAAGCCTCCATCAAAGCCATGCCCTCTCTCCCTGTCTCTGAACTTACTGAATGTGTGATTTGTTTAGAGGAGATTGAAGCGGGTGACCTCGCCAAACAAATGCCCTGTACCCATAAATTCCATGGCGATTGCATTGAGAAGTGGCTGGAGTTACATGGGTCGTGCCCTATTTGTCGATATCAGATGCCAATTGACGATGAAGATGAAGGAAAGAAGATTGATGAAGAAGGATCAGAGAGAAGAGGAGAAAGGGAGATTTGGGTAAGTTTCTCTTTTGATAATGTTACCAGAAATGGGGAATCTGTTCAAACCCCCCCTTCAACAGATTCTGATCATTCTTTTGTACAGTGA 606 46.7 MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRFIFFNPFPPQLMVIHATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMPCTHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKIDEEGSERRGEREIWVSFSFDNVTRNGESVQTPPSTDSDHSFVQ 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8790792 8791397 + Cp4.1LG01g12460.1 Cpe01g01470 462783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01470 201 CDD RING-H2_PA-TM-RING 102 144 - -
Cpe01g01470 201 Pfam Ring finger domain 102 144 IPR001841 -
Cpe01g01470 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MPSR1 75 160 - -
Cpe01g01470 201 SMART ring_2 103 143 IPR001841 -
Cpe01g01470 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 150 IPR013083 -
Cpe01g01470 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 75 160 - -
Cpe01g01470 201 SUPERFAMILY RING/U-box 102 150 - -
Cpe01g01470 201 ProSiteProfiles Zinc finger RING-type profile. 103 144 IPR001841 -
Cpe01g01470 201 MobiDBLite consensus disorder prediction 181 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01470 - - - cmos:111458226 384.415
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01470 Cpe13g00954 CCT
Cpe01g01470 Cpe09g00183 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01470 Cpe-Chr1:8790792 Cpe02g01348 Cpe-Chr2:11923688 3.12E-46 dispersed
Cpe05g01504 Cpe-Chr5:10357142 Cpe01g01470 Cpe-Chr1:8790792 2.58E-07 dispersed
Cpe13g01106 Cpe-Chr13:8898256 Cpe01g01470 Cpe-Chr1:8790792 1.98E-13 dispersed
Cpe20g00198 Cpe-Chr20:1133120 Cpe01g01470 Cpe-Chr1:8790792 1.87E-16 dispersed
Cpe01g01470 Cpe-Chr1:8790792 Cpe13g00954 Cpe-Chr13:7992308 5.12E-29 wgd
Cpe01g01470 Cpe-Chr1:8790792 Cpe09g00183 Cpe-Chr9:1058612 1.38E-97 wgd
Cpe01g01470 Cpe-Chr1:8790792 Cpe09g01094 Cpe-Chr9:9462056 1.80E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g922 . . . . . Bpe10g00877 Bma14g01646 . Cmo04g01742 Cmo18g01167 . Cma18g01147 . Car18g01056 Sed08g1981 Cpe09g00183 Cpe01g01470 Bhi07g01557 Tan04g1072 Cmetu10g1747 Lac13g0324 Hepe10g1749 . . Cla05g02437 Cam05g2622 Cec05g2655 Cco05g2693 Clacu05g2624 Cmu05g2478 Cre05g2591 . . . . Lsi04g00415 Csa05g02459 Chy10g01009 Cme10g00409 . . . . . . . . . . . . . Car04g01702 Car15g00265 Cpe13g00954 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003724 2 1 0 1 1 1 4 1 1 1 1 1 1 1 1 3 1 2 3 1 1 1 2 2 2 3 3 1 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01470 Cpe_Chr01 FPKM 5.010777 6.83556 8.651282 8.804694 10.022622 8.094772 11.505613 11.317518 12.623531 11.843628