Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01474 ATGGCTTCTGTCCTTGTCTTTTTGGCAGCTTTCTATGCCATAGTGTCCTCTGTTGATGCCTATGCAGGTGGAGGCTGGACTAGTGCTCATGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACGATGGGTGGGGCTTGTGGGTATGGCAACTTATATAGCCAAGGCTATGGGACAAACACTGCTGCTCTGAGTACGGCTCTGTTCAACAATGGCTTGAGCTGTGGGTCTTGCTATGAGATTAGGTGTGCTAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTAACAGCCACCAATTTCTGTCCTCCAAACAATGCCCTACCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTACAACACTTTGATCTCTCTCAGCCTGTATTCCAACACATTGCTCAGTATAAAGCAGGAATTGTGCCTGTTGCTTACAGAAGGAACTGTTATGGAAATGATCCTACAGCTCGATTGATAAGACCAGGCCTTCCACACATAATGCAGCCCTTGACTATCTATATTGGTTGGAGGGATTCACAAGATTGTTTCCATCACCGGTCAGAACTACAGCTCGATTGA 582 48.45 MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYKAGIVPVAYRRNCYGNDPTARLIRPGLPHIMQPLTIYIGWRDSQDCFHHRSELQLD 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8805796 8809591 - Cp4.1LG01g12450.1 Cpe01g01474 462787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01474 193 PANTHER EXPANSIN 5 150 - -
Cpe01g01474 193 Gene3D - 12 150 IPR036908 -
Cpe01g01474 193 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Cpe01g01474 193 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Cpe01g01474 193 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Cpe01g01474 193 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Cpe01g01474 193 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Cpe01g01474 193 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Cpe01g01474 193 SUPERFAMILY Barwin-like endoglucanases 7 148 IPR036908 -
Cpe01g01474 193 PANTHER EXPANSIN-A15 5 150 IPR002963 GO:0009664
Cpe01g01474 193 SMART dpbb_1 61 146 IPR007112 -
Cpe01g01474 193 Pfam Lytic transglycolase 61 146 IPR009009 -
Cpe01g01474 193 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cpe01g01474 193 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Cpe01g01474 193 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Cpe01g01474 193 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01474 Cpe-Chr1:8805796 Cpe02g01346 Cpe-Chr2:11913145 5.47E-81 dispersed
Cpe01g02482 Cpe-Chr1:20482482 Cpe01g01474 Cpe-Chr1:8805796 8.52E-66 dispersed
Cpe02g01228 Cpe-Chr2:11088874 Cpe01g01474 Cpe-Chr1:8805796 1.70E-72 dispersed
Cpe07g00350 Cpe-Chr7:2266900 Cpe01g01474 Cpe-Chr1:8805796 5.67E-45 dispersed
Cpe11g00269 Cpe-Chr11:1454386 Cpe01g01474 Cpe-Chr1:8805796 1.06E-43 dispersed
Cpe01g01474 Cpe-Chr1:8805796 Cpe13g00956 Cpe-Chr13:8016994 2.33E-72 wgd
Cpe01g01474 Cpe-Chr1:8805796 Cpe18g00787 Cpe-Chr18:7441911 2.52E-77 wgd
Cpe01g01474 Cpe-Chr1:8805796 Cpe04g01494 Cpe-Chr4:11841897 3.32E-80 wgd
Cpe01g01474 Cpe-Chr1:8805796 Cpe09g00189 Cpe-Chr9:1092462 1.07E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01474 - - csv:101217956 302.367