Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01481 ATGACGAGAGGTTTTAGAAGACGAAATTTGTGTTCAAGGCCCATAGATCGTCTCCGATTCCAGGCATCGGCGGACGGTGCTCCGAAATCGGGATTCCTCAGAGATATGAAGGTGAAGGAGATCTTTACTTATTTGCTTATAGGTCTTCCGTTGGTCGTTTTTGTTGGTTTGGTGTTCAGGAATCCGGCGGCGGATCTGTCATTGGGTTTTGCTGAAGCCAGAGCATTGGAAAGAGTGGTCACTAATGGCAGTTCTGAGAGTTCAGGTTCAGAAAACGGTTTCTCTAGACTTTCCAATAGAGACAAGCTTATTGGAGGCCTTCTCATTCCTGGATTTGATGAAGGATCATGCTTGAGTAGATATCAATCCAGTTTATATCGAAGAACTTCGACCCACAGACCGTCTCCGTACCTCATCTCGAAGCTTAGAGACTACGAAGCGCTTCATCGACGATGTGGTCCGCATACAAAACCATATGATGAAGCAGTAGAGCAGCTCAGATCTGGCAGTAGTGTTAGTTTGACAGAGTGTAAATATGTTGTGTGGATGTCTTATAGTGGCTTGGGAAATAAGATACTCACTTTGGCTTCTGCATTTCTCTATGCCGTTCTTACCGATCGTGTCTTGCTTGTCGATCCGGGGAAGGATATGGCTGATCTATTTTGTGAGCCCTTCCCAGAAAAAACTTGGCTGCTACCAAATGACTTCCCCTTGATGGATCAATTCAGCAACTTTAATCAGAAATCTCCTAATTGTCATGGATATATGCTTAAGATGAACACGCTAAACGAATCGACAGAAGCGCTCCCATCCTATCTATACCTACATTTGGTTCATGATTATGATGATCATGACAAGCTTTTCTTCTGTGATCAAGAACAGGCTCTTTTAAGTAGGGTCCCTTGGCTGATACTCAAGACAGATAACTACTTTGTTCCATCGCTCTTCCTGATCCCGTCTTTCGAGCACGAACTGAGTAACTTATTCCCCCAAAAAGACAACGTGTTTCATCATCTGGGTCGATATCTTTTCCACCCATCGAATCACGTTTGGGGACTGATTACGAGATACTACGAAGCATATCTAACAAGTGCAGATGAATTGATAGGAATTCAAGTAAGAGTGTTCGAGATTGGATCGGGACCATTCGAACATATAATGGATCAGATTTTAAGCTGTACTCTTCAGGAGAAGATACTTCCCGACGTAGACAAGGAAGGCTTCTCTTCGGTTCCCTTGGAACGCCCAAGAGTGAAAGCGGTTTTGATGACATCCTTGAGTTCTGGATACTACGAAAAATTGAGAACCTTGTACTGGGAGTACCCAACCACAACGGGAGAGGTCATTGCAGTTCACCAGCCAAGCTACGAAATGTATCAGCAGACTGAGAAGAAGGCTCACAACAGGAAAGCATGGGCAGAAATGTACCTTCTGAGTATGAGCGATGTATTGGTGACCAGTGCATGGTCGACGTTCGGGTATGTGGCTCAAGGACTCGGGGGATTGAAGCCATGGATTCTTTACAAGGCGGAGAACATGACCACGCCCGATCCAGCGTGTCGTAGGGCGATGTCAATGGAGCCTTGCTTTCATGCTCCTCCGTTCTATGATTGCAAGGCAAAGAAAGGAATAGATACTGGTGTAGTTGTTCCACATGTAAGACATTGTGAAGACATGAGCTGGGGTCTTAAGGTTGTTAACCATCAGGATTTATAA 1716 44.81 MTRGFRRRNLCSRPIDRLRFQASADGAPKSGFLRDMKVKEIFTYLLIGLPLVVFVGLVFRNPAADLSLGFAEARALERVVTNGSSESSGSENGFSRLSNRDKLIGGLLIPGFDEGSCLSRYQSSLYRRTSTHRPSPYLISKLRDYEALHRRCGPHTKPYDEAVEQLRSGSSVSLTECKYVVWMSYSGLGNKILTLASAFLYAVLTDRVLLVDPGKDMADLFCEPFPEKTWLLPNDFPLMDQFSNFNQKSPNCHGYMLKMNTLNESTEALPSYLYLHLVHDYDDHDKLFFCDQEQALLSRVPWLILKTDNYFVPSLFLIPSFEHELSNLFPQKDNVFHHLGRYLFHPSNHVWGLITRYYEAYLTSADELIGIQVRVFEIGSGPFEHIMDQILSCTLQEKILPDVDKEGFSSVPLERPRVKAVLMTSLSSGYYEKLRTLYWEYPTTTGEVIAVHQPSYEMYQQTEKKAHNRKAWAEMYLLSMSDVLVTSAWSTFGYVAQGLGGLKPWILYKAENMTTPDPACRRAMSMEPCFHAPPFYDCKAKKGIDTGVVVPHVRHCEDMSWGLKVVNHQDL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8838019 8840531 - Cp4.1LG01g12170.1 Cpe01g01481 462794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01481 571 Gene3D - 354 511 - -
Cpe01g01481 571 PANTHER FUCOSYLTRANSFERASE 2-RELATED 10 570 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cpe01g01481 571 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 10 570 - -
Cpe01g01481 571 Pfam Xyloglucan fucosyltransferase 98 539 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cpe01g01481 571 Gene3D - 174 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01481 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101216541 1013.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01481 Cpe-Chr1:8838019 Cpe20g00012 Cpe-Chr20:76697 0 dispersed
Cpe14g00402 Cpe-Chr14:2483935 Cpe01g01481 Cpe-Chr1:8838019 0 transposed
Cpe01g01481 Cpe-Chr1:8838019 Cpe02g01051 Cpe-Chr2:9679155 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01481 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.0 3.0e-155 545.8
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.0 6.5e-150 528.1
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.6e-148 523.5
Cpe01g01481 . 81 569 Xyloglucan Fucosyltransferase1 AT1G14100 56.9 3.4e-164 575.5
Cpe20g00012 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.1 2.5e-159 559.3
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 1.4e-157 553.5
Cpe01g01481 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 4.3e-137 485.3
Cpe20g00012 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.7e-133 473.4
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Cpe14g00293 . 30 369 Xyloglucan Fucosyltransferase1 AT1G49710 69.5 7.6e-140 494.6
Cpe13g00716 CCT 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 4.0e-168 588.2
Cpe01g02150 . 7 413 Xyloglucan Fucosyltransferase1 AT1G71990 66.9 1.8e-160 562.8
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 9.0e-203 703.7
Cpe02g01051 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.6 3.4e-186 648.7
Cpe20g00012 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 7.9e-183 637.5
Cpe14g00402 . 13 504 Xyloglucan Fucosyltransferase1 AT2G03220 53.0 5.2e-150 528.5
Cpe01g01481 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.0e-152 535.8
Cpe20g00012 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 2.1e-145 513.1
Cpe01g01481 . 101 568 Xyloglucan Fucosyltransferase1 AT2G15370 52.3 9.6e-146 514.2
Cpe20g00012 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.6 3.9e-139 492.3
Cpe01g01481 . 92 568 Xyloglucan Fucosyltransferase1 AT2G15390 53.3 1.9e-149 526.6
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.7 3.8e-142 502.3
Cpe02g01051 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 7.2e-141 498.0
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 65.1 1.6e-190 662.9
Cpe14g00293 . 42 369 Xyloglucan Fucosyltransferase1 AT3G19280 75.3 9.1e-146 514.2
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 9.0e-203 703.7
Cpe02g01051 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.6 3.4e-186 648.7
Cpe20g00012 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 7.9e-183 637.5
Cpe14g00402 . 13 504 Xyloglucan Fucosyltransferase1 AT2G03220 53.0 5.2e-150 528.5
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 92 568 Xyloglucan Fucosyltransferase1 AT2G15390 53.3 1.9e-149 526.6
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.7 3.8e-142 502.3
Cpe02g01051 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 7.2e-141 498.0
Cpe01g01481 . 101 568 Xyloglucan Fucosyltransferase1 AT2G15370 52.3 9.6e-146 514.2
Cpe20g00012 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.6 3.9e-139 492.3
Cpe01g01481 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.0 3.0e-155 545.8
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.0 6.5e-150 528.1
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.6e-148 523.5
Cpe01g01481 . 81 569 Xyloglucan Fucosyltransferase1 AT1G14100 56.9 3.4e-164 575.5
Cpe20g00012 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.1 2.5e-159 559.3
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 1.4e-157 553.5
Cpe01g01481 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 4.3e-137 485.3
Cpe20g00012 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.7e-133 473.4
Cpe01g01481 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.0e-152 535.8
Cpe20g00012 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 2.1e-145 513.1
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 65.1 1.6e-190 662.9
Cpe14g00293 . 42 369 Xyloglucan Fucosyltransferase1 AT3G19280 75.3 9.1e-146 514.2
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Cpe14g00293 . 30 369 Xyloglucan Fucosyltransferase1 AT1G49710 69.5 7.6e-140 494.6
Cpe13g00716 CCT 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 4.0e-168 588.2
Cpe01g02150 . 7 413 Xyloglucan Fucosyltransferase1 AT1G71990 66.9 1.8e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009001 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01481 Cpe_Chr01 FPKM 19.231756 20.828144 3.17352 4.210368 13.478601 14.841848 13.280481 2.847587 2.659567 2.782086