Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01483 ATGAAGTTCGGCAAGCAATTTGCCGCTCAGATGGTTCCTGAATGGCAGCAAGCCTACATGGATTACGAGTTCCTCAAGTCCCTCTTGAAGCAAATCGACACCTTCAACAAAGCCCACGCTCGAAACCACCCCGTAACCGACTCTGCCCAGCTCAGACGGACCCTCAGCCTCTACAGGGCTTTCAGCGGCCTCACGCTCCGCCACAGCCACAGCCATGGTCATAGTCACGGCCACGGCCATAATAGCCACCCTACAAGTCCAGGGTCGCCGCAGGATGCGGTGGAGGAGCAGGCTATATTGGTGAATGCGGTGAGCCGGGATGGGACGAGGAAGTATCGGACGACGTTTTTGATGGCGGATGAGGAGGGGGGAGAGTATGAGTTGGTGTACTTTAGGTCGTTGGATAGAGAGTTCAATAAAGTGGAGAAGTTTTATAAGTCGAAAGTGGAGGAAGTTGTGAAGGAGGCGAGTGTGTTGAATAAGCAAATGGATGCTTTGATTGCTTTCAGAATCAAAGTGGAGAATCCAAAGGGTGTTTGGGATTTCTCCGGCGACCGGTCGGAGGAGATTTCAAAGCTGGCTACTGATATTGCTGTTTCTACTGCTGCTTTGTCATCTTCCACTCCTTCTGGGGTCCGAGCTAGCAGACGGGTTCATATAGCAATGGACTCCATAGAAGAAGGTGGGTCGAGCCACAAAGAAAGTCATAAACCAGAAAGTGAATCAAAAGAAGAAAAAGATGGAAAGGAAGAGAAGAACACAAAGGATGAAGAAGGGAAAGAAACGAAGATGAAGGCCAACAGACCACCTCCACTTGAACTTCTTGATCGTGTAACAATGAACACAACTCAAGAGACACCAATATCCACCATTAAAGGCCTTTTCAACTTCCCCAAGAACTCAGAACTTCAATTCAACAGAGAAAATCTCAACAAAATTGAGAACCAACTCAAGAGGGCTTTTGTTGTGTTTTACCACAAACTCAGGCTGCTAAAAAGCTTCAGGTAA 1008 47.92 MKFGKQFAAQMVPEWQQAYMDYEFLKSLLKQIDTFNKAHARNHPVTDSAQLRRTLSLYRAFSGLTLRHSHSHGHSHGHGHNSHPTSPGSPQDAVEEQAILVNAVSRDGTRKYRTTFLMADEEGGEYELVYFRSLDREFNKVEKFYKSKVEEVVKEASVLNKQMDALIAFRIKVENPKGVWDFSGDRSEEISKLATDIAVSTAALSSSTPSGVRASRRVHIAMDSIEEGGSSHKESHKPESESKEEKDGKEEKNTKDEEGKETKMKANRPPPLELLDRVTMNTTQETPISTIKGLFNFPKNSELQFNRENLNKIENQLKRAFVVFYHKLRLLKSFR 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8847065 8849473 - Cp4.1LG01g12250.1 Cpe01g01483 462796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01483 335 ProSiteProfiles SPX domain profile. 1 335 IPR004331 -
Cpe01g01483 335 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 334 - -
Cpe01g01483 335 Pfam SPX domain 1 335 IPR004331 -
Cpe01g01483 335 MobiDBLite consensus disorder prediction 223 267 - -
Cpe01g01483 335 CDD SPX_PHO1_like 2 176 IPR034092 -
Cpe01g01483 335 MobiDBLite consensus disorder prediction 223 273 - -
Cpe01g01483 335 MobiDBLite consensus disorder prediction 68 92 - -
Cpe01g01483 335 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 3 1 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01483 - - - csv:101215812 480.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01483 Cpe-Chr1:8847065 Cpe09g00196 Cpe-Chr9:1127142 0 dispersed
Cpe01g01483 Cpe-Chr1:8847065 Cpe13g00962 Cpe-Chr13:8047720 6.75E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g966 . . . . . . . . Cmo04g01756 . . . . . . . Cpe01g01483 . . . . . . . . . . . . . . . . . . . Csa05g02482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01483 Cpe_Chr01 FPKM 0.0 0.0 0.0 0.411498 2.416318 2.193506 3.301767 0.460464 0.0 0.192246