Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01491 ATGGGTGACGATGAAGAAGAACCGCCACCGTCCTCGCCGCAACCGCCCTCCAAACTTAAGCTCCGTCCCTTGAGGCCCACTATTAATCTGCCGCCACGGACCTCTATGGAGTCGCTCTTCAGCGGTGGCCCCGGTTTGGGATTTGGGTTTAGCCCAGGGCCGATGACCCTCGTCTCCAGCTTCTTCTCCGATCCCGATGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCCATGACATCGCCGGTGGCTGCTCCTCCGCTGGAATCTGAGTTCAAAGGCCCTCCTGGTCTGCTCGATTCTCCTGGGCTTCTTTCGCCTAGTCAAGGACCTTTTGGAATGACCCATCAGCAGGCTTTGGCTCAGGTTACGATGCAGGCTGCAGAAGCCTATTCTCATAAGCAAATTCAAGCAGCATCTTTGTCACCATCAGTAGCACCCTTTGCGTCGTCCTTAGAGCTTTCGACGACCTTTCTGGGCGAGAAGACTAAAGATCATCCGATGCAACCGCCATTCCCGAACGCTGGAGTTGCATCCAAAGAGGTATTGGATATCTCTCAATCAGAGCAGAGAGTGCAATCTTCTTTGTGTACTGTTGGTAGACCTGCTGATGATGGCTACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCGGTGAATTTCCTCGAAGCTACTATAAGTGCACGCACCCGAATTGTCCTGTTAGGAAAAAGGTTGAACGATCTCTTGAAGGACAAGTCACTGAGATTATCTACAAGGGGGAGCACAACCACAAACAACCTCAACCGAACAAGCGGGGAAAGGATGTCGTAAATTCTAATGGATGTTCAAGTACTCATGGAAATCCTGAGCTATGTTCTCAAGTTCAGAGAAAATTGAACGAGCTGAAAGATGTGTCTTTCATAAAGAATGATCAAGAATCGAGTCATGTTACGCATGAACAGTTGTCAGGTACTAGTGATGGTGAGGGAGGGAGTGAAATAGAGACTGGAGTGAATCGAAAAGATGACGACGAGCCTGATGCCAAGAGACGGAACACTGAGGTAAGACTTTCTGAGCCAGCATCTTCTCATAGGACTCTTGCAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTGGACGATGGCTACAGGTGGCGAAAGTACGGGCAGAAAATTGTCAAAGGCAACCCTTACCCCAGGAGCTACTATAAATGCACGACATCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCAACGGACCCGAAAGCTGTCATAACGACATATGAGGGTAAACACAATCATGACGTTCCAGCTGGTAAAATCAGCAGCCACAGGTCAGTCAACAGTAACGTTCCACAGCTAAAATCACATAATATTTCAAATAAGAACAATGATCATGGGAACTCCCGACATCAGCATGCTGGAGTTCTACGGTTAAAGGAAGAACAAATAACGTAG 1461 47.98 MGDDEEEPPPSSPQPPSKLKLRPLRPTINLPPRTSMESLFSGGPGLGFGFSPGPMTLVSSFFSDPDDCKSFSQLLAGAMTSPVAAPPLESEFKGPPGLLDSPGLLSPSQGPFGMTHQQALAQVTMQAAEAYSHKQIQAASLSPSVAPFASSLELSTTFLGEKTKDHPMQPPFPNAGVASKEVLDISQSEQRVQSSLCTVGRPADDGYNWRKYGQKQVKGGEFPRSYYKCTHPNCPVRKKVERSLEGQVTEIIYKGEHNHKQPQPNKRGKDVVNSNGCSSTHGNPELCSQVQRKLNELKDVSFIKNDQESSHVTHEQLSGTSDGEGGSEIETGVNRKDDDEPDAKRRNTEVRLSEPASSHRTLAESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTSGCNVRKHVERASTDPKAVITTYEGKHNHDVPAGKISSHRSVNSNVPQLKSHNISNKNNDHGNSRHQHAGVLRLKEEQIT 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8901402 8904724 - Cp4.1LG01g12160.1 Cpe01g01491 462804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01491 486 MobiDBLite consensus disorder prediction 1 40 - -
Cpe01g01491 486 SMART WRKY_cls 378 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe01g01491 486 SMART WRKY_cls 203 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe01g01491 486 MobiDBLite consensus disorder prediction 458 486 - -
Cpe01g01491 486 Pfam WRKY DNA -binding domain 204 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe01g01491 486 Pfam WRKY DNA -binding domain 379 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe01g01491 486 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 20 485 - -
Cpe01g01491 486 SUPERFAMILY WRKY DNA-binding domain 202 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe01g01491 486 MobiDBLite consensus disorder prediction 254 285 - -
Cpe01g01491 486 SUPERFAMILY WRKY DNA-binding domain 370 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe01g01491 486 MobiDBLite consensus disorder prediction 312 327 - -
Cpe01g01491 486 MobiDBLite consensus disorder prediction 465 486 - -
Cpe01g01491 486 ProSiteProfiles WRKY domain profile. 204 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe01g01491 486 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 20 485 IPR044810 GO:0003700
Cpe01g01491 486 MobiDBLite consensus disorder prediction 267 285 - -
Cpe01g01491 486 ProSiteProfiles WRKY domain profile. 373 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe01g01491 486 MobiDBLite consensus disorder prediction 329 353 - -
Cpe01g01491 486 MobiDBLite consensus disorder prediction 305 361 - -
Cpe01g01491 486 Gene3D WRKY domain 363 439 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe01g01491 486 Gene3D WRKY domain 189 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01491 Cpe-Chr1:8901402 Cpe14g00818 Cpe-Chr14:6556851 8.95E-82 dispersed
Cpe03g00149 Cpe-Chr3:753145 Cpe01g01491 Cpe-Chr1:8901402 1.41E-62 transposed
Cpe05g00995 Cpe-Chr5:6508052 Cpe01g01491 Cpe-Chr1:8901402 7.71E-67 transposed
Cpe01g01491 Cpe-Chr1:8901402 Cpe09g00203 Cpe-Chr9:1176967 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48867 PF03106 WRKY 9.20E-26 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01491 - - cmo:103489160 737.643