Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01492 ATGTCTGACGAGGAGCACCACTTCGAGTCGAAGGCCGACGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCTGGAACCATCCGCAAGAATGGTTACATTGTCATCAAGGGCAGGCCCTGCAAGGTTGTTGAAGTTTCAACCTCTAAGACTGGAAAGCACGGACATGCTAAATGTCACTTTGTTGCCATTGACATTTTCACCTCTAAAAAGCTTGAAGATATCGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTCAGTCGCACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCAAACGATGAGAGTCTGATGACCCAGATCAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATCGGCCCAAAATAG 480 47.92 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPNDESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8905484 8907924 - Cp4.1LG01g12200.1 Cpe01g01492 462805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01492 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe01g01492 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cpe01g01492 159 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe01g01492 159 CDD S1_eIF5A 86 156 - -
Cpe01g01492 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cpe01g01492 159 Gene3D - 86 158 IPR012340 -
Cpe01g01492 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cpe01g01492 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cpe01g01492 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe01g01492 159 Gene3D - 1 85 IPR014722 -
Cpe01g01492 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cpe01g01492 159 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Cpe01g01492 159 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01492 Cpe-Chr1:8905484 Cpe09g00205 Cpe-Chr9:1185802 1.89E-114 dispersed
Cpe01g01492 Cpe-Chr1:8905484 Cpe09g00204 Cpe-Chr9:1182506 1.89E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01492 K03263 K02180 csv:101214693 313.923