Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01493 ATGAGCGTGTTAGGCGTTAGAATAGCGAATGGCATAGCCGTGAAACCGCTCAAAAGCCTGAAGATTAGCTCCACGCCAAATTACCAAATTACCCTCTCGATTGCATTTCACACTCACTGGCAATTCACATTTGACAGTGGCGCCTTTGTCTTCTCGAGGTCGGTCCGAGCTGCAAAAATGGAGAAGGCCTTGACCAGAGTGAGCAGCTTAAAGGTCGGGAGCTTGTGGATTTCAAAGAAAGCCAAGGAGGAACTCGCTAATATCACCGACGATTTCCAAACTTTCTCAAATACCGTGGAAGAGAAGGCAAAGTGGATTTTCAACAAGCTAAAAGGAAAGCCATTGAAGAGCCTGCCGGAATTACTCCGTGAGTACAACTTACCGCCCGGCCTCTTTCCTCAGAACATAATCAGCTACGAATTTGATGAATCCAGGTCCAGGCTGATTGTGTACTTACCATCCGTTTGTGAGATAAGCTTCAAGGATTCTTCTGTGGTCAGATATGCAACACGGGTGAAAGGAACTCTTCAGAGAGGGAAGCTAACAAGCATTGAAGGAATGAAGACAAAAGTCCTAGTGTGGGTGAAAGTGACAAGCGTGATGGTTGAGGGCTACAAATCTGATAAGGTCTGGTTCACAGCAGGAGTGAAGAAGTCGAGACCGAAAGATGCGTACGATAAGCCCCGTGACGCCGTTAGGAGTGAAAGCGCGGGAGAACGAAACAGGGAAAAGAACTCGAAAATGGCGATGCCTGGATATCCAAGGGCTTTTGCAACACTAGGTTCTTGTTATCCACGGCATTCTCCGATCTCCCTTCATCCTCTTAAGGTTGACCTCTCTGGTTTTGTTCATAGAAGATCTGGAAATAAAGGAATCAAGCCAAAATGGCGCACCATGGCACATGAAAATGATAGCATACATAGTATCTCCCAGCAAGATGTTGAGAGCTCAGCAGATTATGAACGATCACCAAGATCCTTAAGCCAAGAAAGCTTTATCCTCAGTTCCATGAAGATGAACTTCTTGGAACGATTAATATTGGCTTGGAGGATAATTTTTCCATCATCAACATCTAAATCGAACTCTAATGCTATGATTGCCAAGCAGCGGTTAAAGATGATTCTGTTGTCCGATCGATGTGCAGTTAATGATGAAACTAAACAAAAAATTGTGGACAGCATGTTGAGTTCTCTTTCGGATTTTGTAGAAATAGATTCAGAAGATAAAGTTCAATTTAATGTCTCTACTGATTCAGATCTCAGAACGATTTACTCTGTAACGGTGCCCGTGCGAAGGGTGAAGGCTGATTATCAAGGCAGTGAGGAAGTTGGAGCAACCATAAATACAGAATTGAAGGATGATGGAGAGAGATCTGGCTCTGCAGGTCCCATTTTCGACTCATTAATTGCAGAAGGAAAAGAGTATTTGCTGTTCTTCGGACCATAG 1446 44.05 MSVLGVRIANGIAVKPLKSLKISSTPNYQITLSIAFHTHWQFTFDSGAFVFSRSVRAAKMEKALTRVSSLKVGSLWISKKAKEELANITDDFQTFSNTVEEKAKWIFNKLKGKPLKSLPELLREYNLPPGLFPQNIISYEFDESRSRLIVYLPSVCEISFKDSSVVRYATRVKGTLQRGKLTSIEGMKTKVLVWVKVTSVMVEGYKSDKVWFTAGVKKSRPKDAYDKPRDAVRSESAGERNREKNSKMAMPGYPRAFATLGSCYPRHSPISLHPLKVDLSGFVHRRSGNKGIKPKWRTMAHENDSIHSISQQDVESSADYERSPRSLSQESFILSSMKMNFLERLILAWRIIFPSSTSKSNSNAMIAKQRLKMILLSDRCAVNDETKQKIVDSMLSSLSDFVEIDSEDKVQFNVSTDSDLRTIYSVTVPVRRVKADYQGSEEVGATINTELKDDGERSGSAGPIFDSLIAEGKEYLLFFGP 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8908389 8913964 - Cp4.1LG01g12220.1 Cpe01g01493 462806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01493 481 Gene3D - 96 236 IPR036758 -
Cpe01g01493 481 PANTHER T31J12.3 PROTEIN-RELATED 62 235 IPR007493 -
Cpe01g01493 481 SUPERFAMILY At5g01610-like 71 232 IPR036758 -
Cpe01g01493 481 MobiDBLite consensus disorder prediction 220 249 - -
Cpe01g01493 481 Gene3D Cell division topological specificity factor MinE 351 430 IPR036707 GO:0032955|GO:0051301
Cpe01g01493 481 MobiDBLite consensus disorder prediction 220 246 - -
Cpe01g01493 481 Pfam Septum formation topological specificity factor MinE 365 431 IPR005527 GO:0032955|GO:0051301
Cpe01g01493 481 PANTHER - 62 235 - -
Cpe01g01493 481 Pfam Protein of unknown function, DUF538 120 225 IPR007493 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01493 - - - csv:101222451 358.607
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01493 Cpe09g00207 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01493 Cpe-Chr1:8908389 Cpe10g00969 Cpe-Chr10:5486102 1.28E-46 dispersed
Cpe07g00647 Cpe-Chr7:4637425 Cpe01g01493 Cpe-Chr1:8908389 2.98E-64 transposed
Cpe01g01493 Cpe-Chr1:8908389 Cpe09g00207 Cpe-Chr9:1197598 8.46E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g988 Blo01g00443 . Bda01g02137 . . . . . Cmo04g01768 Cmo18g01142 . Cma18g01121 . Car18g01033 Sed06g1493 Cpe09g00207 Cpe01g01493 Bhi07g01520 Tan04g1033 Cmetu10g0314 Lac13g0354 Hepe10g1778 . . Cla05g02411 Cam05g2589 Cec05g2621 Cco05g2660 Clacu05g2590 Cmu05g2444 . . . . . Lsi04g00383 Csa05g02493 Chy10g01041 Cme10g00378 . . . . . Bpe02g02326 Bma01g00113 . . . . Cma04g01687 . Car04g01724 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014513 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 0 1 0 1 1 1 1 1 2 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01493 Cpe_Chr01 FPKM 17.93235 19.469467 20.618362 20.301327 23.803244 22.862764 22.469879 25.353727 26.911999 23.877745