Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01498 ATGTTTAGTTTCATGAAATCCCCCGCGAAAGTTACTAAGCAGAATTCTGTAGATGAATTACCAGGCGGATCTGGCACTAATCCTTTTGATTCAGATTCTGGGCCTGAAGCCAAACAAACTCTTAATGCTGCAAGAAGAACTTCTTCTGAGCCTGTGCTCGTTATACCAAACTCCATTTCCGCCAACGCTTTTGATGATGATGATGATGATGGATTTGTTGGAAAAAGAGGGACTGCAACTTCTGCAGCCTCTAAAGACAGGTACAAAAATGATTTTCGTGACTCAGGAGGACTCGAGAACCAAAGTGTGCAGGAATTGGAGAACTATGCTGTGTATAAAGCAGAGGAGACCACAAAATCTGTTAACAATTGCTTGAAGATTGCTGAGGACATAAGGGAAGATGCTGCCAAGACCCTTGACATGTTGCATCAGCAGGGTGAGCAAATTGAGAGGACCCACAGGATGGCTGCTGATATGGATAAAGATTTAAGTAAGGGTGAGAAACTTCTGAATAATCTGGGAGGCATGTTCTCTAAGCCATGGAAGCCAAAGAAGACCAAAGAAATTACAGGCCCTCTTATAACAGCAGATCATTCCTCTGGGCGAGCTGAAAACAACAAGGAGCAAAGGGAAAAACTCGGTGTATCTACGGGCAAAAAACAGTCGGGGACTAAAACACCGCCCTCTGAACCAACAGGTGCAATACAAAAAGTTGAGGCTCAGAAGGAAATGCAAGATGATGCACTCTCAGATTTAAGTGATATCTTGGGTGATCTGAAGAGTATGGCTGTGGACATGGGAAGCGAGCTTGACAGGCAAAACAAAGCTCTTGATCATCTAAGCGACGATGTCGACGAGCTGAATTCTAGAGTGAAAGGCGCCAATCAGCGGGCTCGTCATTTGGTTGGGAAGTAA 915 44.48 MFSFMKSPAKVTKQNSVDELPGGSGTNPFDSDSGPEAKQTLNAARRTSSEPVLVIPNSISANAFDDDDDDGFVGKRGTATSAASKDRYKNDFRDSGGLENQSVQELENYAVYKAEETTKSVNNCLKIAEDIREDAAKTLDMLHQQGEQIERTHRMAADMDKDLSKGEKLLNNLGGMFSKPWKPKKTKEITGPLITADHSSGRAENNKEQREKLGVSTGKKQSGTKTPPSEPTGAIQKVEAQKEMQDDALSDLSDILGDLKSMAVDMGSELDRQNKALDHLSDDVDELNSRVKGANQRARHLVGK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8937991 8942417 - Cp4.1LG01g12180.1 Cpe01g01498 462811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01498 304 Gene3D - 236 303 - -
Cpe01g01498 304 MobiDBLite consensus disorder prediction 63 83 - -
Cpe01g01498 304 Gene3D - 97 175 - -
Cpe01g01498 304 MobiDBLite consensus disorder prediction 216 231 - -
Cpe01g01498 304 Coils Coil 270 297 - -
Cpe01g01498 304 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 304 - -
Cpe01g01498 304 SUPERFAMILY SNARE fusion complex 234 301 - -
Cpe01g01498 304 SUPERFAMILY SNARE fusion complex 101 172 - -
Cpe01g01498 304 MobiDBLite consensus disorder prediction 1 50 - -
Cpe01g01498 304 CDD SNARE_SNAP25N_23N_29N_SEC9N 108 172 IPR044766 GO:0005484|GO:0031201
Cpe01g01498 304 MobiDBLite consensus disorder prediction 174 234 - -
Cpe01g01498 304 SMART tSNARE_6 234 301 IPR000727 -
Cpe01g01498 304 SMART tSNARE_6 106 173 IPR000727 -
Cpe01g01498 304 MobiDBLite consensus disorder prediction 8 50 - -
Cpe01g01498 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 239 301 IPR000727 -
Cpe01g01498 304 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 304 - -
Cpe01g01498 304 CDD SNARE_Qc 242 300 - -
Cpe01g01498 304 MobiDBLite consensus disorder prediction 201 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01498 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101213250 535.798
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01498 Cpe09g00936 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01498 Cpe-Chr1:8937991 Cpe18g00772 Cpe-Chr18:7349112 1.93E-101 wgd
Cpe01g01498 Cpe-Chr1:8937991 Cpe02g01037 Cpe-Chr2:9597807 9.30E-17 wgd
Cpe01g01498 Cpe-Chr1:8937991 Cpe20g00060 Cpe-Chr20:298428 1.74E-115 wgd
Cpe01g01498 Cpe-Chr1:8937991 Cpe04g01473 Cpe-Chr4:11710465 3.08E-89 wgd
Cpe01g01498 Cpe-Chr1:8937991 Cpe09g00212 Cpe-Chr9:1223998 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g56 . . . . . Bpe10g00897 Bma14g01662 . Cmo04g01776 . . . . . . Cpe09g00936 Cpe01g01498 . . . . . . . . . . . . . . . . . . . . Chy10g01049 . . Blo11g00791 . . . . . . . . . Cma04g01693 . Car04g01730 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005869 2 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01498 Cpe_Chr01 FPKM 32.613777 34.559086 10.653358 9.359378 41.813656 36.922607 42.635494 3.649154 4.217752 4.389025