Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01498 ATGTTTAGTTTCATGAAATCCCCCGCGAAAGTTACTAAGCAGAATTCTGTAGATGAATTACCAGGCGGATCTGGCACTAATCCTTTTGATTCAGATTCTGGGCCTGAAGCCAAACAAACTCTTAATGCTGCAAGAAGAACTTCTTCTGAGCCTGTGCTCGTTATACCAAACTCCATTTCCGCCAACGCTTTTGATGATGATGATGATGATGGATTTGTTGGAAAAAGAGGGACTGCAACTTCTGCAGCCTCTAAAGACAGGTACAAAAATGATTTTCGTGACTCAGGAGGACTCGAGAACCAAAGTGTGCAGGAATTGGAGAACTATGCTGTGTATAAAGCAGAGGAGACCACAAAATCTGTTAACAATTGCTTGAAGATTGCTGAGGACATAAGGGAAGATGCTGCCAAGACCCTTGACATGTTGCATCAGCAGGGTGAGCAAATTGAGAGGACCCACAGGATGGCTGCTGATATGGATAAAGATTTAAGTAAGGGTGAGAAACTTCTGAATAATCTGGGAGGCATGTTCTCTAAGCCATGGAAGCCAAAGAAGACCAAAGAAATTACAGGCCCTCTTATAACAGCAGATCATTCCTCTGGGCGAGCTGAAAACAACAAGGAGCAAAGGGAAAAACTCGGTGTATCTACGGGCAAAAAACAGTCGGGGACTAAAACACCGCCCTCTGAACCAACAGGTGCAATACAAAAAGTTGAGGCTCAGAAGGAAATGCAAGATGATGCACTCTCAGATTTAAGTGATATCTTGGGTGATCTGAAGAGTATGGCTGTGGACATGGGAAGCGAGCTTGACAGGCAAAACAAAGCTCTTGATCATCTAAGCGACGATGTCGACGAGCTGAATTCTAGAGTGAAAGGCGCCAATCAGCGGGCTCGTCATTTGGTTGGGAAGTAA 915 44.48 MFSFMKSPAKVTKQNSVDELPGGSGTNPFDSDSGPEAKQTLNAARRTSSEPVLVIPNSISANAFDDDDDDGFVGKRGTATSAASKDRYKNDFRDSGGLENQSVQELENYAVYKAEETTKSVNNCLKIAEDIREDAAKTLDMLHQQGEQIERTHRMAADMDKDLSKGEKLLNNLGGMFSKPWKPKKTKEITGPLITADHSSGRAENNKEQREKLGVSTGKKQSGTKTPPSEPTGAIQKVEAQKEMQDDALSDLSDILGDLKSMAVDMGSELDRQNKALDHLSDDVDELNSRVKGANQRARHLVGK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8937991 8942417 - Cp4.1LG01g12180.1 Cpe01g01498 462811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01498 304 Gene3D - 236 303 - -
Cpe01g01498 304 MobiDBLite consensus disorder prediction 63 83 - -
Cpe01g01498 304 Gene3D - 97 175 - -
Cpe01g01498 304 MobiDBLite consensus disorder prediction 216 231 - -
Cpe01g01498 304 Coils Coil 270 297 - -
Cpe01g01498 304 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 304 - -
Cpe01g01498 304 SUPERFAMILY SNARE fusion complex 234 301 - -
Cpe01g01498 304 SUPERFAMILY SNARE fusion complex 101 172 - -
Cpe01g01498 304 MobiDBLite consensus disorder prediction 1 50 - -
Cpe01g01498 304 CDD SNARE_SNAP25N_23N_29N_SEC9N 108 172 IPR044766 GO:0005484|GO:0031201
Cpe01g01498 304 MobiDBLite consensus disorder prediction 174 234 - -
Cpe01g01498 304 SMART tSNARE_6 234 301 IPR000727 -
Cpe01g01498 304 SMART tSNARE_6 106 173 IPR000727 -
Cpe01g01498 304 MobiDBLite consensus disorder prediction 8 50 - -
Cpe01g01498 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 239 301 IPR000727 -
Cpe01g01498 304 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 304 - -
Cpe01g01498 304 CDD SNARE_Qc 242 300 - -
Cpe01g01498 304 MobiDBLite consensus disorder prediction 201 215 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01498 Cpe09g00936 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01498 Cpe-Chr1:8937991 Cpe18g00772 Cpe-Chr18:7349112 1.93E-101 wgd
Cpe01g01498 Cpe-Chr1:8937991 Cpe02g01037 Cpe-Chr2:9597807 9.30E-17 wgd
Cpe01g01498 Cpe-Chr1:8937991 Cpe20g00060 Cpe-Chr20:298428 1.74E-115 wgd
Cpe01g01498 Cpe-Chr1:8937991 Cpe04g01473 Cpe-Chr4:11710465 3.08E-89 wgd
Cpe01g01498 Cpe-Chr1:8937991 Cpe09g00212 Cpe-Chr9:1223998 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01498 K18211 - csv:101213250 535.798