Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01517 ATGAATCCTTTCTCCTCAGGGACGCGTCTCAGGGACATGATTCGGGCCATTCGTGCTTGCAAAACTGCAGCTGAGGAGCGTGCAGTAATTCGAAAAGAGTGTGCTGCTATTCGAGCTTCCATCGATGAGAATGATCATGACTATAGGCATCGAAACCTCGCGAAGCTCATGTTCATTCATATGCTTGGTTATCCCACGCATTTTGGTCAAATGGAATGCTTGAAGTTGATTGCATCTGCTGGTTTTCCAGAAAAGAGAATTGGGTATCTTGGTCTCATGTTACTTCTAGATGAAAGACAAGAAGTGCTGATGTTGGTCACAAACTCATTAAAACAAGATCTCAACCACTCAAACCAGTATATCGTAGGACTTGCTCTTTGTGCTTTAGGAAATATTTGTTCAGCTGAAATGGCTCGTGATCTTGCACCAGAAGTTGAAAGATTGTTACAATTCCGAGATCCAAACATTAGGAAGAAAGCAGCATTGTGTTCAATTAGGATTATAAGGAAAGTACCAGACCTTGCAGAAAATTTTGTTAACCCTGCCGCCTCCTTACTGAAAGAAAAGCACCATGGGGTTATGATAACAGGAGTTCAACTGTGTACAGAGCTTTGCAAACACAGCTCAGAAGCCCTTGAATATTTTCGAAAGAAGTCAACAGAGGCCATGGTCAAGACACTGAAGGATTTGGTTAATAGTCCATATGCCCCTGAGTATGATATTGCCGGAATAACGGACCCATTTCTTCACATCCGGATGCTTAGATTTTTGCGTGTCTTGGGTCAGGGAGATGCAGATGCTAGTGACTGCATGAATGATATACTTGCACAGGTGGCAACAAAAACTGAATCAAACAAAAATTCAGGGAATGCTATACTATATGAATGCGTTGAAACTATTATGAGTATTGAAGATAGTGGTGGCTTGCGTGTACTTGCAATCAATATCTTGGGAAGATTCTTGTCTAATCGTGATAACAATATCAGATATGTAGCATTGAACATGCTTATGAAGGCTATCACAGTAGATGCTCAAGCAGTTCAGAGACATCGGGCAACTATCGTGGAATGTGTAAAGGCTAATGGCGAAGTCTGGTACCAGGTCATGCTTGGGGATTCAGATGCTTCAATCCGGAAAAGGGCCCTTGATCTTGTTTACCTTCTAGTGAATGAGAGCAACGTCAAGCCCCTGACCAAAGAGCTTATTGAATTCCTGGAAGTTGCTGATCAAGAATTTAAGGGAGATCTTACTGCAAAAATTTGCTCAATTGTTGCGAAGTACTCCCCAGAGAAAATATGGTACATTGATCAGATGCTGAAGGTTCTCTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGCATGCCCTTATTGTCGTGATAAGCAATGCATCTGACCTCCATGGGTATACTGTAAGGGCCCTGTACAGAGCATTTCAGAGATCTAGTGAGCAGGAAAGTCTTCTTCGAGTGGCAGTTTGGTGCACCGGAGAATATGGCGACATGTTGGTCAATAATATTGGAATGCTTGATATAGAGGATCCCATAGTAGTAACAGAATCTGATGCTGTGGATGTTGCCGAAACTGCTATTAAACGCATTGGCTCGGATCTTACCACCAAAGCAATGGGCATGATTGCTTTGCTGAAGCTCTCTTCTCGTTTCCCATCATGTTCAGAGAGGATCAACAATTCAATTGTTCAATATAAAGGAAGCCTCGTGCTTGAATTGCAGCAAAGATCCATCGAATTCAATTCTATCATTGCAAGTCATCATAAAATGAGGTCTGTGTTAGTTGAAAGGATGCCAGTTTTGGATGAGGCAACGTTCATTGGAAAAAGGGCTGGTTCTATGACAGGATCAGTATCGACTTCCAATGCTGCTGCAATTAACCTTCCAAATGGAGTTTCTAAATCTTCTGCTCCTCTCGTCGATTTACTTGATCTAAGTTCAGATGATGTTCCTGTGCCTAGCTCTTCTGGTGGTGGTTTTATTCAGGATCTTCTTGGGCTTGATTTGTCCGCAGCTCCAGAGAAATCTGGAAGTAATCCAACTCCAATAAGTGGAACTGATGTTCTGTTGGATCTTTTGTCAATTGGAACATCACCACCTGCACAGAGCACTGCGCCTGCAACTGACATATTATCTAATCAAGAAAAATCGCCTACTTCTCAATTGGATGGACTCTCCTCTCTTTCTTCTCTTCCAGCAAACAAACCTTCTGCTGCTGTATCTTCTCCTACAATTGATTTATTGGGTGGACTGTCCCCTAACTTGGCAAGCGCAGGTGATGAGAATGGTTCAGTTTATCCATCTATAGTTGCATACGAGAGTGGATCACTGAGAATAACTTTTGACTTCTCTAAGACAGCTGGGAACCCACAGACGACATTGATCCTTGCCACATTTAAAAACTTATCTCCTAATAGCTATACAAATTTTATTTTCCAGGCAGCAGTTCCAAAGTTTCTTCAACTGCATTTAGATTCGGCTAGTGCTAGTACTCTGCCTGGAAGTGGTAATGGGTCTATCACACAAAATTTGAGAGTGACTAATAGCCAATATGGAAAGAAACATCTTGTGATGCGCCTAAGGATAGCGTACAAAGTGGATGACAAAGATGTTTTGGAGGAGGGTCAAGTCAGTAATTTCCCTCGTAACTTGTGA 2667 42.03 MNPFSSGTRLRDMIRAIRACKTAAEERAVIRKECAAIRASIDENDHDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIRKVPDLAENFVNPAASLLKEKHHGVMITGVQLCTELCKHSSEALEYFRKKSTEAMVKTLKDLVNSPYAPEYDIAGITDPFLHIRMLRFLRVLGQGDADASDCMNDILAQVATKTESNKNSGNAILYECVETIMSIEDSGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATIVECVKANGEVWYQVMLGDSDASIRKRALDLVYLLVNESNVKPLTKELIEFLEVADQEFKGDLTAKICSIVAKYSPEKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAFQRSSEQESLLRVAVWCTGEYGDMLVNNIGMLDIEDPIVVTESDAVDVAETAIKRIGSDLTTKAMGMIALLKLSSRFPSCSERINNSIVQYKGSLVLELQQRSIEFNSIIASHHKMRSVLVERMPVLDEATFIGKRAGSMTGSVSTSNAAAINLPNGVSKSSAPLVDLLDLSSDDVPVPSSSGGGFIQDLLGLDLSAAPEKSGSNPTPISGTDVLLDLLSIGTSPPAQSTAPATDILSNQEKSPTSQLDGLSSLSSLPANKPSAAVSSPTIDLLGGLSPNLASAGDENGSVYPSIVAYESGSLRITFDFSKTAGNPQTTLILATFKNLSPNSYTNFIFQAAVPKFLQLHLDSASASTLPGSGNGSITQNLRVTNSQYGKKHLVMRLRIAYKVDDKDVLEEGQVSNFPRNL 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9066361 9082704 - Cp4.1LG01g15190.1 Cpe01g01517 462830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01517 888 PIRSF AP1_gamma 6 888 IPR017107 GO:0005794|GO:0016192|GO:0030121
Cpe01g01517 888 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 768 885 IPR008153 -
Cpe01g01517 888 Pfam Adaptin N terminal region 26 590 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cpe01g01517 888 Pfam Adaptin C-terminal domain 771 885 IPR008152 GO:0006886|GO:0016192
Cpe01g01517 888 SUPERFAMILY Clathrin adaptor appendage domain 747 887 IPR013041 -
Cpe01g01517 888 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 5 888 - -
Cpe01g01517 888 MobiDBLite consensus disorder prediction 703 734 - -
Cpe01g01517 888 Gene3D - 758 887 - -
Cpe01g01517 888 SUPERFAMILY ARM repeat 25 594 IPR016024 -
Cpe01g01517 888 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 5 888 - -
Cpe01g01517 888 SMART alpha_adaptinc2 765 885 IPR008152 GO:0006886|GO:0016192
Cpe01g01517 888 Gene3D - 2 606 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01517 K12391 AP1G1; AP-1 complex subunit gamma-1 - csv:101212445 1531.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01517 Cpe07g00095 CCT
Cpe01g01517 Cpe07g00095 ECH
Cpe01g01517 Cpe09g00233 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00250 Cpe-Chr1:1433599 Cpe01g01517 Cpe-Chr1:9066361 0 dispersed
Cpe01g01517 Cpe-Chr1:9066361 Cpe16g00489 Cpe-Chr16:5956669 6.57E-57 dispersed
Cpe01g01517 Cpe-Chr1:9066361 Cpe05g00435 Cpe-Chr5:2491572 1.53E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005001 2 3 2 3 1 1 2 1 1 1 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01517 Cpe_Chr01 FPKM 4.59063 6.143086 3.454751 3.629965 5.746892 5.671089 5.080484 2.761895 2.687563 2.55494