Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01517 ATGAATCCTTTCTCCTCAGGGACGCGTCTCAGGGACATGATTCGGGCCATTCGTGCTTGCAAAACTGCAGCTGAGGAGCGTGCAGTAATTCGAAAAGAGTGTGCTGCTATTCGAGCTTCCATCGATGAGAATGATCATGACTATAGGCATCGAAACCTCGCGAAGCTCATGTTCATTCATATGCTTGGTTATCCCACGCATTTTGGTCAAATGGAATGCTTGAAGTTGATTGCATCTGCTGGTTTTCCAGAAAAGAGAATTGGGTATCTTGGTCTCATGTTACTTCTAGATGAAAGACAAGAAGTGCTGATGTTGGTCACAAACTCATTAAAACAAGATCTCAACCACTCAAACCAGTATATCGTAGGACTTGCTCTTTGTGCTTTAGGAAATATTTGTTCAGCTGAAATGGCTCGTGATCTTGCACCAGAAGTTGAAAGATTGTTACAATTCCGAGATCCAAACATTAGGAAGAAAGCAGCATTGTGTTCAATTAGGATTATAAGGAAAGTACCAGACCTTGCAGAAAATTTTGTTAACCCTGCCGCCTCCTTACTGAAAGAAAAGCACCATGGGGTTATGATAACAGGAGTTCAACTGTGTACAGAGCTTTGCAAACACAGCTCAGAAGCCCTTGAATATTTTCGAAAGAAGTCAACAGAGGCCATGGTCAAGACACTGAAGGATTTGGTTAATAGTCCATATGCCCCTGAGTATGATATTGCCGGAATAACGGACCCATTTCTTCACATCCGGATGCTTAGATTTTTGCGTGTCTTGGGTCAGGGAGATGCAGATGCTAGTGACTGCATGAATGATATACTTGCACAGGTGGCAACAAAAACTGAATCAAACAAAAATTCAGGGAATGCTATACTATATGAATGCGTTGAAACTATTATGAGTATTGAAGATAGTGGTGGCTTGCGTGTACTTGCAATCAATATCTTGGGAAGATTCTTGTCTAATCGTGATAACAATATCAGATATGTAGCATTGAACATGCTTATGAAGGCTATCACAGTAGATGCTCAAGCAGTTCAGAGACATCGGGCAACTATCGTGGAATGTGTAAAGGCTAATGGCGAAGTCTGGTACCAGGTCATGCTTGGGGATTCAGATGCTTCAATCCGGAAAAGGGCCCTTGATCTTGTTTACCTTCTAGTGAATGAGAGCAACGTCAAGCCCCTGACCAAAGAGCTTATTGAATTCCTGGAAGTTGCTGATCAAGAATTTAAGGGAGATCTTACTGCAAAAATTTGCTCAATTGTTGCGAAGTACTCCCCAGAGAAAATATGGTACATTGATCAGATGCTGAAGGTTCTCTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGCATGCCCTTATTGTCGTGATAAGCAATGCATCTGACCTCCATGGGTATACTGTAAGGGCCCTGTACAGAGCATTTCAGAGATCTAGTGAGCAGGAAAGTCTTCTTCGAGTGGCAGTTTGGTGCACCGGAGAATATGGCGACATGTTGGTCAATAATATTGGAATGCTTGATATAGAGGATCCCATAGTAGTAACAGAATCTGATGCTGTGGATGTTGCCGAAACTGCTATTAAACGCATTGGCTCGGATCTTACCACCAAAGCAATGGGCATGATTGCTTTGCTGAAGCTCTCTTCTCGTTTCCCATCATGTTCAGAGAGGATCAACAATTCAATTGTTCAATATAAAGGAAGCCTCGTGCTTGAATTGCAGCAAAGATCCATCGAATTCAATTCTATCATTGCAAGTCATCATAAAATGAGGTCTGTGTTAGTTGAAAGGATGCCAGTTTTGGATGAGGCAACGTTCATTGGAAAAAGGGCTGGTTCTATGACAGGATCAGTATCGACTTCCAATGCTGCTGCAATTAACCTTCCAAATGGAGTTTCTAAATCTTCTGCTCCTCTCGTCGATTTACTTGATCTAAGTTCAGATGATGTTCCTGTGCCTAGCTCTTCTGGTGGTGGTTTTATTCAGGATCTTCTTGGGCTTGATTTGTCCGCAGCTCCAGAGAAATCTGGAAGTAATCCAACTCCAATAAGTGGAACTGATGTTCTGTTGGATCTTTTGTCAATTGGAACATCACCACCTGCACAGAGCACTGCGCCTGCAACTGACATATTATCTAATCAAGAAAAATCGCCTACTTCTCAATTGGATGGACTCTCCTCTCTTTCTTCTCTTCCAGCAAACAAACCTTCTGCTGCTGTATCTTCTCCTACAATTGATTTATTGGGTGGACTGTCCCCTAACTTGGCAAGCGCAGGTGATGAGAATGGTTCAGTTTATCCATCTATAGTTGCATACGAGAGTGGATCACTGAGAATAACTTTTGACTTCTCTAAGACAGCTGGGAACCCACAGACGACATTGATCCTTGCCACATTTAAAAACTTATCTCCTAATAGCTATACAAATTTTATTTTCCAGGCAGCAGTTCCAAAGTTTCTTCAACTGCATTTAGATTCGGCTAGTGCTAGTACTCTGCCTGGAAGTGGTAATGGGTCTATCACACAAAATTTGAGAGTGACTAATAGCCAATATGGAAAGAAACATCTTGTGATGCGCCTAAGGATAGCGTACAAAGTGGATGACAAAGATGTTTTGGAGGAGGGTCAAGTCAGTAATTTCCCTCGTAACTTGTGA 2667 42.03 MNPFSSGTRLRDMIRAIRACKTAAEERAVIRKECAAIRASIDENDHDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIRKVPDLAENFVNPAASLLKEKHHGVMITGVQLCTELCKHSSEALEYFRKKSTEAMVKTLKDLVNSPYAPEYDIAGITDPFLHIRMLRFLRVLGQGDADASDCMNDILAQVATKTESNKNSGNAILYECVETIMSIEDSGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATIVECVKANGEVWYQVMLGDSDASIRKRALDLVYLLVNESNVKPLTKELIEFLEVADQEFKGDLTAKICSIVAKYSPEKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAFQRSSEQESLLRVAVWCTGEYGDMLVNNIGMLDIEDPIVVTESDAVDVAETAIKRIGSDLTTKAMGMIALLKLSSRFPSCSERINNSIVQYKGSLVLELQQRSIEFNSIIASHHKMRSVLVERMPVLDEATFIGKRAGSMTGSVSTSNAAAINLPNGVSKSSAPLVDLLDLSSDDVPVPSSSGGGFIQDLLGLDLSAAPEKSGSNPTPISGTDVLLDLLSIGTSPPAQSTAPATDILSNQEKSPTSQLDGLSSLSSLPANKPSAAVSSPTIDLLGGLSPNLASAGDENGSVYPSIVAYESGSLRITFDFSKTAGNPQTTLILATFKNLSPNSYTNFIFQAAVPKFLQLHLDSASASTLPGSGNGSITQNLRVTNSQYGKKHLVMRLRIAYKVDDKDVLEEGQVSNFPRNL 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9066361 9082704 - Cp4.1LG01g15190.1 Cpe01g01517 462830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01517 888 PIRSF AP1_gamma 6 888 IPR017107 GO:0005794|GO:0016192|GO:0030121
Cpe01g01517 888 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 768 885 IPR008153 -
Cpe01g01517 888 Pfam Adaptin N terminal region 26 590 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cpe01g01517 888 Pfam Adaptin C-terminal domain 771 885 IPR008152 GO:0006886|GO:0016192
Cpe01g01517 888 SUPERFAMILY Clathrin adaptor appendage domain 747 887 IPR013041 -
Cpe01g01517 888 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 5 888 - -
Cpe01g01517 888 MobiDBLite consensus disorder prediction 703 734 - -
Cpe01g01517 888 Gene3D - 758 887 - -
Cpe01g01517 888 SUPERFAMILY ARM repeat 25 594 IPR016024 -
Cpe01g01517 888 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 5 888 - -
Cpe01g01517 888 SMART alpha_adaptinc2 765 885 IPR008152 GO:0006886|GO:0016192
Cpe01g01517 888 Gene3D - 2 606 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01517 Cpe07g00095 CCT
Cpe01g01517 Cpe07g00095 ECH
Cpe01g01517 Cpe09g00233 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00250 Cpe-Chr1:1433599 Cpe01g01517 Cpe-Chr1:9066361 0 dispersed
Cpe01g01517 Cpe-Chr1:9066361 Cpe16g00489 Cpe-Chr16:5956669 6.57E-57 dispersed
Cpe01g01517 Cpe-Chr1:9066361 Cpe05g00435 Cpe-Chr5:2491572 1.53E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01517 K12391 - csv:101212445 1531.54