Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01518 ATGGCATCAAGATCACCCACAAACTTTTTGGGCCTGGCTTCTGGAGACTTACTGGATGTCCCTCATATGCCTAGGTCCTTGCCACGGGTAATGACTGTTCCTGGAATTATTTCTGAATTGGATGATTATGGGAGTAATGACGGAGATTCGGAGTCTTCATCTGTATGCCGTGAGCGGAAAATCATAGTTATGAATATGTTGCCCTTGCAAGCTAAAAAAGATGGTCAATCTGGCAAATGGTGCTTCAGTTTAGACGAGGATTCAATTTTATTGCAGCTAAAGGATGGGTTTTCACCTGAGATGGAGGTTATATACATAGGTTCCCTCAAGGTTGAAATCGACGCCAACGAACAGGAAGAGGTTGCTCAGAAGTTGTTCGACAATTTTAACTGTGTGCCTACATTTCTTCCTTATGATCTACAGAAGAAATTTTATCTTGGATTCTGTAAACAGCAGCTATGGCCCTTATTCCATTACATGCTACCCATGTGCCCAGAGCACGGTGATCGCTTTGATCGGCAGCTTTGGCAAGCCTATGTTTCTGCGAATAAACTATTTGCTGACAAGGTGATGGAAATCATCAATTCTGAGGAAGATTCTGTTTGGGTTCATGATTATCATTTGATGCTTCTTCCAACGTTCCTGAGGAAGCGTTACAATCGAGTTAAACTCGGATTTTTTCTGCATAGCCCGTTTCCGTCTTCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGCCTATTAAACTGTGATTTAGTTGGTTTTCATACGTTTGATTATGCTCGCCACTTCCTCTCATGCTGCAGCAGAATGTTGGGCTTGGACTATGAATCTAAGCGGGGACATATTGGACTAGATTATTATGGCCGCACGGTATATATCAAAATTCTGCCTGTAGGCATTCACATGGGTCGGCTGGAATCGGTGATGAATCTTCCATCTACATTTGCGAAAGTCAGAGAAATTCGAGATCAATTCATGGGGAAGAAATTAATACTTGGTATTGATGACATGGACATTTTCAAGGGTATAAGCCTGAAGCTTCTCGCTGTGGAACAGCTCTTACGGCAACGTCCTGAGTTGCGGGGCAAAATAATCCTAGTTCAAATAGTGAACCCTGCAAGGGGTTCAGGGAAAGACGTTTATGAAGCTCAGAAGGAAACCTACGCGGCTGCTGAAAGGATCAATGAAGCTTACGGTTCAAATAACTACAAACCAGTAATTCTGATTGACCGCCCTGTTCCACGTTTTGAGAAGACTGCTTATTATGCTTTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGTATGAATTTGGTTCCATACAAGTATATTGTCTGTAGGCAAGGAACTCCTCTTATGGATGAGGCTATGGGCTTACAAATTGGTTCCCCTCGGACGAGTATGCTTGTAGTGTCTGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCCATCAGGGTTAACCCTTGGGACATTGATGCTGTTGCCGATGCCTTGGAACTAGCCATGACCATGCAGGAGTCCGAGAAGCAGTTGCGGCATGAGAAACATTATCGTTATTCGAAACCCATGGCATCAAGATCACCCACAAACTTTTTGGGCCTGGCTTCTGGAGACTTACTGGATGTCCCTCGTATGCCTAGGTCCTTGCCACGGGTAATGACTGTTCCTGGAATTATTTCTGAATTGGATGATTATGGGAGTAATGACGGAGATTCGGAGTCTTCATCTGTATGCCGTGAGCGGAAAATCATAGTTATGAATATGTTGCCCTTGCAAGCTAAAAAAGATGGTCAATCTGGCAAATGGTGCTTCAGTTTAGACGAGGATTCAATTTTATTGCAGCTAAAGGATGGGTTTTCACCTGAGATGGAGGTTATATACATAGGTTCCCTCAAGGTTGAAATCGACGCCAACGAACAGGAAGAGGTTGCTCAGAAGTTGTTCGACAATTTTAACTGTGTGCCTACATTTCTTCCTTATGATCTACAGAAGAAATTTTATCTTGGATTCTGTAAACAGCAGCTATGGCCCTTATTCCATTACATGCTACCCATGTGCCCAGAGCACGGTGATCGCTTTGATCGGCAGCTTTGGCAAGCCTATGTTTCTGCGAATAAACTATTTGCTGACAAGGTGATGGAAATCATCAATTCTGAGGAAGATTCTGTTTGGGTTCATGATTATCATTTGATGCTTCTTCCAACGTTCCTGAGGAAGCGTTACAATCGAGTTAAACTCGGATTTTTTCTGCATAGCCCGTTTCCGTCTTCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGCCTATTAAACTGTGATTTAGTTGGTTTTCATACGTTTGATTATGCTCGCCACTTCCTCTCATGCTGCAGCAGAATGTTGGGCTTGGACTATGAATCTAAGCGGGGACATATTGGACTAGATTATTATGGCCGCACGGTATATATCAAAATTCTGCCTGTAGGCATTCACATGGGTCGGCTGGAATCGGTGATGAATCTTCCATCTACATTTGCGAAAGTCAGAGAAATTCGAGATCAATTCATGGGGAAGAAATTAATACTTGGTATTGATGACATGGACATTTTCAAGGGTATAAGCCTGAAGCTTCTCGCTGTGGAACAGCTCTTACGGCAACGTCCTGAGTTGCGGGGCAAAATAATCCTAGTTCAAATAGTGAACCCTGCAAGGGGTTCAGGGAAAGACGTTTATGAAGCTCAGAAGGAAACCTACGCGGCTGCTGAAAGGATCAATGAAGCTTACGGTTCAAATAACTACAAACCAGTAATTCTGATTGACCGCCCTGTTCCACGTTTTGAGAAGACTGCTTATTATGCTTTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGTATGAATTTGGTTCCATACAAGTATATTGTCTGTAGGCAAGGAACTCCTCTTATGGATGAGGCTATGGGCTTACAAATTGGTTCCCCTCGGACGAGTATGCTTGTAGTGTCTGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCCATCAGGGTTAACCCTTGGGACATTGATGCTGTTGCCGATGCCTTGGAACTAGCCATGACCATGCAGGAGTCCGAGAAGCAGTTGCGGCATGAGAAACATTATCGTTATGTCAGTACCCATGATATAGGGTATTGGTCTCGTAGTTTTATGCAAGATTTAGTCAGAGCATGTCAAGATCACTATAGTAAACGGTGCTGGGGAATTGGTTTGGGTCTGCGTTTTAGAGTTGTTTCCCTTTCTCCTGAGTTTAGGAAGTTAACAATTGATCACATTGTCTCAGCTTACAAAAGAACTCATAGAAGGGCGATATTTTTGGATTACGATGGCACTATCATTCCACAGAGCTCTATAATTAAGACACCGAGCCCTGAAATTATCTCTGTCTTGACTACGCTTTGCAATGATCCCTGTAATACTGTGTTCATTGTTAGTGGGAGGGGGAGAAGTTCTTTAGGTGAGTGGTTTGCCTCTTGTGAGTTGTTGGGGATTGCAGCAGAACATGGGCACTTCATAAGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCCGTTATCTTCTGATCTGGACTGGATTAAAATTGTAGAGCCAGTGATGAGATTATACATGGAAGCAACAGATGGGTCGAGCATAGAATCCAAAGAGAGTGCTTTAGTCTGGCATCACCAAGATGCCGATTCGGACTTCGGATCCTGTCAAGCTAAGGAGTTGCTGAACCATCTGGAAAATGTACTTGCCAATGAACCAGCCGTCGTTAAAAGGGGCCAACATATTGTTGAAGTGAAGCCACAGGGAGTAAGCAAAGGGCTGGTCGCAGAAAAGGTTCTGTCGAGGATGGTGGATAGCGGAAGACCACCTGATTTTGTAATGTGCATTGGAGATGACAGATCAGATGAAGATATGTTCGAGAGCATATTAAGCACCGTGTCCAGTCCCTCACTGCCTTCCGCTCCAGAAATTTTTGCCTGCACTGTCGGGCGAAAGCCAAGCAAGGCAAAGTTTTACCTCGATGATACTTCCGATGTCGTAAGATTGCTGCAATGCCTCGCTTCTTCGTCATGTTCAAGATCTCGGCAACTACCACAGATGCGTGTTTGTTTTGAGAGTGTTTTTTGA 4170 43.88 MASRSPTNFLGLASGDLLDVPHMPRSLPRVMTVPGIISELDDYGSNDGDSESSSVCRERKIIVMNMLPLQAKKDGQSGKWCFSLDEDSILLQLKDGFSPEMEVIYIGSLKVEIDANEQEEVAQKLFDNFNCVPTFLPYDLQKKFYLGFCKQQLWPLFHYMLPMCPEHGDRFDRQLWQAYVSANKLFADKVMEIINSEEDSVWVHDYHLMLLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTFAKVREIRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQRPELRGKIILVQIVNPARGSGKDVYEAQKETYAAAERINEAYGSNNYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDEAMGLQIGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAMTMQESEKQLRHEKHYRYSKPMASRSPTNFLGLASGDLLDVPRMPRSLPRVMTVPGIISELDDYGSNDGDSESSSVCRERKIIVMNMLPLQAKKDGQSGKWCFSLDEDSILLQLKDGFSPEMEVIYIGSLKVEIDANEQEEVAQKLFDNFNCVPTFLPYDLQKKFYLGFCKQQLWPLFHYMLPMCPEHGDRFDRQLWQAYVSANKLFADKVMEIINSEEDSVWVHDYHLMLLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTFAKVREIRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQRPELRGKIILVQIVNPARGSGKDVYEAQKETYAAAERINEAYGSNNYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDEAMGLQIGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAMTMQESEKQLRHEKHYRYVSTHDIGYWSRSFMQDLVRACQDHYSKRCWGIGLGLRFRVVSLSPEFRKLTIDHIVSAYKRTHRRAIFLDYDGTIIPQSSIIKTPSPEIISVLTTLCNDPCNTVFIVSGRGRSSLGEWFASCELLGIAAEHGHFIRWGGTSEWETSPLSSDLDWIKIVEPVMRLYMEATDGSSIESKESALVWHHQDADSDFGSCQAKELLNHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVRLLQCLASSSCSRSRQLPQMRVCFESVF 1389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9083985 9088791 - Cp4.1LG01g15170.1 Cpe01g01518 462831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01518 1389 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 530 1376 - -
Cpe01g01518 1389 SUPERFAMILY HAD-like 1120 1368 IPR036412 -
Cpe01g01518 1389 CDD HAD_TPP 1121 1362 - -
Cpe01g01518 1389 CDD GT20_TPS 59 526 IPR001830 GO:0003824|GO:0005992
Cpe01g01518 1389 CDD GT20_TPS 588 1072 IPR001830 GO:0003824|GO:0005992
Cpe01g01518 1389 Gene3D - 1248 1380 IPR023214 -
Cpe01g01518 1389 Gene3D - 1119 1244 IPR023214 -
Cpe01g01518 1389 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 527 - -
Cpe01g01518 1389 Pfam Trehalose-phosphatase 1123 1358 IPR003337 GO:0003824|GO:0005992
Cpe01g01518 1389 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 527 - -
Cpe01g01518 1389 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 588 1076 - -
Cpe01g01518 1389 Gene3D Glycogen Phosphorylase B; 47 315 - -
Cpe01g01518 1389 Gene3D Glycogen Phosphorylase B; 576 844 - -
Cpe01g01518 1389 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 1121 1322 IPR006379 -
Cpe01g01518 1389 Pfam Glycosyltransferase family 20 588 1072 IPR001830 GO:0003824|GO:0005992
Cpe01g01518 1389 Pfam Glycosyltransferase family 20 59 526 IPR001830 GO:0003824|GO:0005992
Cpe01g01518 1389 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 530 1376 IPR001830 GO:0003824|GO:0005992
Cpe01g01518 1389 TIGRFAM T6PP: trehalose-phosphatase 1118 1368 IPR003337 GO:0003824|GO:0005992
Cpe01g01518 1389 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 527 IPR001830 GO:0003824|GO:0005992
Cpe01g01518 1389 Gene3D Glycogen Phosphorylase B; 845 1058 - -
Cpe01g01518 1389 Gene3D Glycogen Phosphorylase B; 316 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00249 Cpe-Chr1:1427573 Cpe01g01518 Cpe-Chr1:9083985 0 dispersed
Cpe01g01518 Cpe-Chr1:9083985 Cpe04g01547 Cpe-Chr4:12122590 0 dispersed
Cpe01g01518 Cpe-Chr1:9083985 Cpe18g00836 Cpe-Chr18:7720004 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01518 K16055 - csv:101212688 1652.88