Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01524 ATGATTCGAAAATCAAACGACTTCAATCGCCGGATTCTGTCGTTACCGGCGATTCAACCATGCGAATGCACATCTCCCGCGACGTTGTTGACGTCTTTGATCAATATCAGTCGAAACATCTGCGGCTACAGATCGGAGTTCTTCGGTAGCAACAAGCGAAACGCCATTAAAGCGATTCGCCAAATCGAAATCCTTCTGATGTTCTTTGAAGAAATTCAAGGTCGAAAAGCGGAAGATCTGTCGGATTCTGTTGTTTTAATCTTACTGGAGCTCCATTTTATCTTCCAGAAGCTTCTGTTTCTTTTGGAGGATTGTGCCCTAGAAGGTGCTCGTTTGTTCATGCTTATGAAATCGGAGTTCGTCGCGAATCGGTTCCAGGTTTTGATCCGATCCGTCGCTTTGGCTCTGGAGATTTTGCCTTTGGATTCGATCGATTTGCCTATCGAAGTCGTCGAGTTTGTGGAATTAGCGACGAAACAAACACGAAAGATGAAATTTCAAATCGATCGCGAAGATGAAGAGATTCTCATCGAGGTAAGATCAATTCTAGCTGTTTTCGATTGCCGTGTTACTCCGGATAATACTCAAATCAAACGATTTCTTGATTATATTGGGATTAAAACATGGAGTTTATGCAATAAGGAGGTGAAATTCTTGGAGTCGGAAATTGAAATCGAATGGTCGGCTCACGAGAAGCTAGAGTTTTCCTTTTTAAGCAAATTGATTGGTTTGATGAACTACTGTCGATGCATATTATTTGATGTTATCGATTACGAAGCAGTTCCGCTTGTCCATCGATATGGAGCCGAAATCATCGATTGTTTTAACCACGATGATTTTCGATGCCCAATCTCGTTGGATTTCATGATTGATCCAGTAACAGTAGGAACAGGGCAGACATATGATCGCTCTTCGATTCAAAAATGGTTGAGGGCTGGAAATTCCACCTGCCCTAAAACAGGGGAGAGATTGAAGAACAGAGAGTTAGTCCCCAATTTAGCTCTCCGTCGGATAATTCGGCGATACTGTTCTAAACATTCAACCCCTTATCCAGAATCAAGCAAACAAAAACGCAACATAACGAGAACAATTGTTGCAGGTAGCTCAACAGCCGAGAAGATCGTTTGGGTTTTGGCGAAATATTTAGCTCGCCTTCTGGAAACAGGAACGCCAAACGAGAAGAACAAAGCCGCTTATGAGATCAAACTTCTATCCAAATCAAGCATTTTTTATCGGTCTTACTTGGTGGAAGTTGGTCTGATTCCAAATTTATTAAAGCTTTTGAGATCATCAGATGGTTTGATGCAAAAGAACGCAATTGCAGCTGTTTTGAATCTTTCAAAGCATTCAAAAAGCAAAAGAGTAATAGCAGAAAACAGAGGATTGGAGGCAATTATAAATGTTTTAACGATGGGTTACACAACAGAAGCCCGTCAATTATCTGCTTATACTCTGTTTTACATGGCTTCCATTGAAGAGTACAGAAAGCTCATAGGCCAAACCCCAGAAGCACTTATGGGCTTAATGAACTTACTCAAGGAAGATTCAGATCGTAGCAAAAAGAACGCAATGGTTGCAATATATGGACTTCTTACGCATCCTGAAAACCACAGAAAAGTTCTCTCCATTGGAGCAGTTCCTTCATTGGTGAATTTGCTTGAAACATCCGATAGGGAAACTCTCATTGCAGATTCAATGGAGATTCTTGCAACTCTAGCAGAGAAGCCGGAAGGAGCCGCCGCGATCATGCGATGTGGGGCTTTGAGTTTAACAATGGAGTTCATGAGTTCATGTAGCTCAAGTGCAGGACGAGAGTACTCTGTTTGTTTACTGCTAGCTCTGTGCATCCATGGCGGATGTGAAGTAGTCCGAATCGTTGCAAAAAGCGAGGCCGTAATTTCATCTCTGTACATTATTATCAGAGAAGGCACAGCCCGTGGGAGAAGGAAGGCGGGTTCTTTGATGAGAATTCTCCATGAACACTGCGAAGTAGTGGCCGCAAGCTCCGACCCAATCCCTGTTCGCCTTTCAAATGAACGATCTGTTCAAGCCTGGTAA 2058 42.57 MIRKSNDFNRRILSLPAIQPCECTSPATLLTSLINISRNICGYRSEFFGSNKRNAIKAIRQIEILLMFFEEIQGRKAEDLSDSVVLILLELHFIFQKLLFLLEDCALEGARLFMLMKSEFVANRFQVLIRSVALALEILPLDSIDLPIEVVEFVELATKQTRKMKFQIDREDEEILIEVRSILAVFDCRVTPDNTQIKRFLDYIGIKTWSLCNKEVKFLESEIEIEWSAHEKLEFSFLSKLIGLMNYCRCILFDVIDYEAVPLVHRYGAEIIDCFNHDDFRCPISLDFMIDPVTVGTGQTYDRSSIQKWLRAGNSTCPKTGERLKNRELVPNLALRRIIRRYCSKHSTPYPESSKQKRNITRTIVAGSSTAEKIVWVLAKYLARLLETGTPNEKNKAAYEIKLLSKSSIFYRSYLVEVGLIPNLLKLLRSSDGLMQKNAIAAVLNLSKHSKSKRVIAENRGLEAIINVLTMGYTTEARQLSAYTLFYMASIEEYRKLIGQTPEALMGLMNLLKEDSDRSKKNAMVAIYGLLTHPENHRKVLSIGAVPSLVNLLETSDRETLIADSMEILATLAEKPEGAAAIMRCGALSLTMEFMSSCSSSAGREYSVCLLLALCIHGGCEVVRIVAKSEAVISSLYIIIREGTARGRRKAGSLMRILHEHCEVVAASSDPIPVRLSNERSVQAW 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9127821 9129878 + Cp4.1LG01g15220.1 Cpe01g01524 462837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01524 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515
Cpe01g01524 685 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 669 - -
Cpe01g01524 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 349 IPR013083 -
Cpe01g01524 685 SMART arm_5 449 490 IPR000225 GO:0005515
Cpe01g01524 685 SMART arm_5 407 448 IPR000225 GO:0005515
Cpe01g01524 685 SMART arm_5 575 616 IPR000225 GO:0005515
Cpe01g01524 685 SMART arm_5 533 574 IPR000225 GO:0005515
Cpe01g01524 685 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Cpe01g01524 685 PANTHER U BOX DOMAIN-CONTAINING 4 669 - -
Cpe01g01524 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 587 IPR000225 GO:0005515
Cpe01g01524 685 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Cpe01g01524 685 SUPERFAMILY RING/U-box 277 351 - -
Cpe01g01524 685 CDD RING-Ubox_PUB 280 322 IPR045210 -
Cpe01g01524 685 SUPERFAMILY ARM repeat 378 661 IPR016024 -
Cpe01g01524 685 Gene3D - 354 669 IPR011989 -
Cpe01g01524 685 Pfam U-box domain 278 347 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01524 - - - cmax:111469698 1299.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01524 Cpe-Chr1:9127821 Cpe20g00231 Cpe-Chr20:1330562 0 dispersed
Cpe01g01524 Cpe-Chr1:9127821 Cpe09g00791 Cpe-Chr9:7325977 2.98E-95 transposed
Cpe01g01524 Cpe-Chr1:9127821 Cpe01g02504 Cpe-Chr1:20584372 1.06E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g734 . . . . . . . Bma15g00190 . . . . . . Sed06g1631 . Cpe01g01524 Bhi07g01714 Tan04g1218 Cmetu10g0188 Lac13g0211 Hepe10g1648 . . Cla05g02532 Cam05g2722 Cec05g2753 Cco05g2794 Clacu05g2724 Cmu05g2578 Cre05g2692 Cone2ag0897 . . . Lsi04g00538 Csa05g02344 Chy10g00911 Cme10g00515 Blo06g00872 . . . . . . . . . . Cma04g01724 . Car04g01755 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002583 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01524 Cpe_Chr01 FPKM 0.83029 0.755479 1.414675 1.99786 1.674352 1.702684 1.983248 2.691246 2.460221 2.758244