Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01526 ATGATGCGTCACCTGCTGGACTCGCCAGCTGAAAGAGAAACAGGTAATTTCTTGTTCTTGATGTTTTTATGTAGCGGTTCTGAAATCGTCTCCGGTTCTTTTCTTCCTTCCCTTTGTAGTCTTCTAGGGCAAAGCAATCTGGAAGATAAGCCTGGAAGCTTTCAACTTCCTCGCGATCTTTTTTCGACTTCAATGGCGGATTCCTCCTCCTCATCCCCTGCGACCCTCGATTCAAATCCTCAAGCTGCCGAGCCTGAAAACCCAAATTTCCAGGCCAACAAAGCCGAATCTGCCGCTTCTTCTTTTCCTCCACCGCAATCACTACCACCAACATCGCTTTCTGTCGGAATGAACCCTACCATGCATTCACCCTTGGTGTCAACGCCGCAACCACCTCCTTCTTTATCGTATGTCGCGGCGGGCGTTCCTCCGACAGCTCCGTCTTTTCGGCCGGTTCCTTTCTCAGCTCATCAGTTCTCGCCCATGCCCGGCGCTGGCATGCTGAATCCAAACTATTCTAATATTGGGGTTCAGCCTCCGGGTGTTGGCTCGGTTGCGGCGCCTGCTCCTGGTATGGCAAGTGGCGGTACGGGAGCTGTTCTAGTTCCAGTACCACAACCGATGATGGCTTATCAAGTTCCACCAGGTCAGATTCCAAATCCGGTGATGAGGCCGTACGCCACTATGCCAAATGGTTTCGCAGCTGTGCCAACTGCTACTCCTCAAGGGGCCTTTCCTATCCCTGTTATATTGGATACTGCCCCTGGATATTTGAATTGCCAGAAGCAGACCATGTTAGCACCTGAGTGTTCGTTCGCCTTGTTTCTAAGGTTATCTATGCATTCAGCTGGTGATAGTTTCCATTCCTATGCTGCCATCATTTATATGCTTTGGATTGTGGTAATGGCATCCATGAATCCTCATCAATTATTCTTCTATATATCTTTAACAGCATTAGATGGTGTTCCTCGATTTCCTTCCCCATATCATGGTATGATTAGGACACCCTTTCCTCCACGGCCACCTGGTGCTATGGGCATGGTTCCAGCTATGCCACGGCCTCCTGTTCCTGGGATTCCTGGTGTTCGTCTAATGATCCCTCCTGTGGTTAGGCCTGCTGTTCTCCCAAGCGTTACACCAGCCGAGAAACCACAAACTACGATTTACATTGGCCGAATTGCACAATCAGTGGGAAATGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGCTGGAAACGAGCCCAAGATCCTACGGATGGAACTCCTAGAACTTTTGGATTCTGCGAGTTTGAGTCTGCTGAAGGCGTTCTTCGTGCTCTACGATTACTGACAAAGTTAAACATTGATGGACAAGAACTCGTGCTGAAAGGTACTCAGGCAACAAGAGATTATCTTAAGCGTTATGTTGAGAAGAAAGCTGAGAACTCAAAGAAACAGGAAGAAACACAACTTTCAGAGACTAAGGTCGAAGAAACAGACACAGCAAATGTGGCTAAAAATGAAACTTCAAAGCCCCCTGCGGAGGATTCAAAGGAGGATCAGGATTCAGGAGAAAAAGAAGATCATTACATTGCCTGTTCTGCAGTTTTAAGTGATGAAGATAGAGATGCTGATCGAGAGGTATCGGAAAAACTTACAAATGCACTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCTCTACTGACAGCCACTGATGTCTCTGGTAATTCAAGTGCAGAACCATCTGTTAAAATGAAAGATGGTGAAGCTGTCTCTGATATTTTGAAAAGTGATGCAGCTGAGGATAGAAATGATGATGACACAACTAGTGACAATAAACTAACTAGTGAGCATGACAAGCCTGAAACAAGCTCACCTGACAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAACGAGACAGGGAGAGGGATCTGAAAAGGGACAAGGAGCGGGAAATTGAGAGATATGAACGAGAGACAGAGCGGGAGCGAGCTAGGAAAGAGAGGGAACAAAGAAGAAAGTTTGAGGAGTCTGAGCGACAGTATGAAGAATGTCTTAAAGAATGGGAATATCGAGAAAGAGAGAGAGAAAAGCAAAGACAGTATGAGAAGGAGAGGGAGAAAGAGAAAGAGCGTAAAAGGAAGAAGGAGATATTGTATGATGAAGATGATGAGGATGATGATTCTAGAAGAAAATGGCGGCGAGGTGCTCTCGAGGAAAAGAGGAAGAAGAGGTCTAGAGAAAAGGAAGATGATTCGGTAGATAGACAGAAAGAGGAAGAAGAAATTGCTGAGGCCAAGAGGAAGGCTGAGGAGGAACAGCAGCTGAAACAGAAAGATCTACTGAACACTCAATCTGGTCAGATGACGAGTGTTGATGAGAAAACTGTTCTTGCTGAAGAATCTGCTAATGAGGTTGAGGTTATGGATTCTGAACGTGATCCTGAGCTTGATTCTAGCTGTGATAACTATACAGGGGATGGGATCTTACAAAATGGTAGTGGTGATGAATTAAATACGACTCGACAGAGTGGAGGCTTGCCTGCGAAAAGATTAGGATTTGGTTTAGTGGGATCTGGAAAACGGACTGCTGTACCTTCCGTCTTTCATGAGGAGGAGGATGAAGCACAGAAAGAGAAGAAGATGAGGCCACTGGTTCCAATTGATTACTCAGCTGAGGAACTCCAGGCTGTGCAACCTGCCAGTACTGGGGCTTTGCCGCCAAATTTAGCTGCAGCAGCGGAATTTGCAAAACGTATATCAAATGTTAATTCCAAAGAGGAGAAGCCTGACAGTGAAAGGGAGCGAGGAAGGCGTTCCAGTGAAAAGTCTAGTCGGGATAGAGACCGAAATGATGAGGAGGCGTATCGCAACAAAGATGAGAACAAGGCAATAGACAGAGACAGGGAGCGAGAGCATGTTTTGGAAAAAGTAAAAATACCTGATAACAAAAAGCTTTTGGACGCAAAACAGTTGATCGATATGATACCAAAGACGAAGGAGGAGTTATTCTCATATGACATAAACTGGACTATTTACGAAAAGCATGCACTACACGAGAGAATGAGACCCTGGATTTCAAAAAAGATAACAGAGTTTTTGGGGGAGGAGGAAACTACTCTTGTCGATTACATTGTTTCAAGTACTCAGGAACACGTAAAGGCATCCCAAATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTGATCTTCGAAATAAAAAAGGTAGAAACTGGTCTAGCTTTCAGAACAAAAGCATGA 3297 45.53 MMRHLLDSPAERETGNFLFLMFLCSGSEIVSGSFLPSLCSLLGQSNLEDKPGSFQLPRDLFSTSMADSSSSSPATLDSNPQAAEPENPNFQANKAESAASSFPPPQSLPPTSLSVGMNPTMHSPLVSTPQPPPSLSYVAAGVPPTAPSFRPVPFSAHQFSPMPGAGMLNPNYSNIGVQPPGVGSVAAPAPGMASGGTGAVLVPVPQPMMAYQVPPGQIPNPVMRPYATMPNGFAAVPTATPQGAFPIPVILDTAPGYLNCQKQTMLAPECSFALFLRLSMHSAGDSFHSYAAIIYMLWIVVMASMNPHQLFFYISLTALDGVPRFPSPYHGMIRTPFPPRPPGAMGMVPAMPRPPVPGIPGVRLMIPPVVRPAVLPSVTPAEKPQTTIYIGRIAQSVGNDFMLSLLQLCGPVKSWKRAQDPTDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELVLKGTQATRDYLKRYVEKKAENSKKQEETQLSETKVEETDTANVAKNETSKPPAEDSKEDQDSGEKEDHYIACSAVLSDEDRDADREVSEKLTNALEERLKSRPLPPPPLLTATDVSGNSSAEPSVKMKDGEAVSDILKSDAAEDRNDDDTTSDNKLTSEHDKPETSSPDRSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKEREQRRKFEESERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSVDRQKEEEEIAEAKRKAEEEQQLKQKDLLNTQSGQMTSVDEKTVLAEESANEVEVMDSERDPELDSSCDNYTGDGILQNGSGDELNTTRQSGGLPAKRLGFGLVGSGKRTAVPSVFHEEEDEAQKEKKMRPLVPIDYSAEELQAVQPASTGALPPNLAAAAEFAKRISNVNSKEEKPDSERERGRRSSEKSSRDRDRNDEEAYRNKDENKAIDRDREREHVLEKVKIPDNKKLLDAKQLIDMIPKTKEELFSYDINWTIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRTKA 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9140562 9146161 - Cp4.1LG01g15320.1 Cpe01g01526 462839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01526 1098 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 388 457 IPR000504 GO:0003723
Cpe01g01526 1098 Coils Coil 639 688 - -
Cpe01g01526 1098 MobiDBLite consensus disorder prediction 476 501 - -
Cpe01g01526 1098 CDD RRM_RBM25 386 469 IPR034268 -
Cpe01g01526 1098 MobiDBLite consensus disorder prediction 476 885 - -
Cpe01g01526 1098 Gene3D - 378 499 IPR012677 -
Cpe01g01526 1098 SMART rrm1_1 387 460 IPR000504 GO:0003723
Cpe01g01526 1098 MobiDBLite consensus disorder prediction 63 102 - -
Cpe01g01526 1098 Coils Coil 749 783 - -
Cpe01g01526 1098 SMART pwi_2 1014 1087 IPR002483 GO:0006397
Cpe01g01526 1098 MobiDBLite consensus disorder prediction 63 131 - -
Cpe01g01526 1098 Pfam PWI domain 1021 1084 IPR002483 GO:0006397
Cpe01g01526 1098 Coils Coil 474 494 - -
Cpe01g01526 1098 ProSiteProfiles PWI domain profile. 1001 1098 IPR002483 GO:0006397
Cpe01g01526 1098 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 71 1097 - -
Cpe01g01526 1098 Coils Coil 692 719 - -
Cpe01g01526 1098 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 386 471 IPR000504 GO:0003723
Cpe01g01526 1098 MobiDBLite consensus disorder prediction 779 797 - -
Cpe01g01526 1098 MobiDBLite consensus disorder prediction 508 555 - -
Cpe01g01526 1098 MobiDBLite consensus disorder prediction 798 820 - -
Cpe01g01526 1098 MobiDBLite consensus disorder prediction 586 778 - -
Cpe01g01526 1098 SUPERFAMILY PWI domain 1018 1086 IPR036483 GO:0006397
Cpe01g01526 1098 SUPERFAMILY RNA-binding domain, RBD 338 459 IPR035979 GO:0003676
Cpe01g01526 1098 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 71 1097 - -
Cpe01g01526 1098 MobiDBLite consensus disorder prediction 921 968 - -
Cpe01g01526 1098 MobiDBLite consensus disorder prediction 824 846 - -
Cpe01g01526 1098 Gene3D PWI domain 979 1093 - -
Cpe01g01526 1098 MobiDBLite consensus disorder prediction 866 885 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01526 K12822 RBM25, S164; RNA-binding protein 25 - csv:101214372 1034.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01526 Cpe09g00500 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01526 Cpe-Chr1:9140562 Cpe09g00500 Cpe-Chr9:3315065 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01526 Cpe_Chr01 FPKM 1.810827 0.0 0.0 0.0 12.974197 14.463205 13.412193 0.0 0.0 0.0