Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01541 ATGAACCATCTCTTTGAACTTCCTGAAAAGATTTGCTATGTGCAATGTGGAATCTGCACCACCATTTTGCTGGTCAGCGTGCCGTGCAGCAGCTTGTCGATGGAGGTGACCGTGACGTGCGGCCACTGCTCAAGCCTCCTTTCTGTTAACATGATGAGAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTCTATCTCGCAATCTGCCCAAAGAAGGTTGTAGAGAAATGAGTTCAGGGAAGTTGTTTGACAGTTTCATAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGTCACACCTCCCTCTGTAAACAAACCTCCTGAGAAAAGACAGCGTGTCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTGAAAACCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCTGCAAAAAATTGGGCAAACTTCCCTCCAACAATCCAACAAAAAGAAGACCCACAGAACACTCAAATTCCAGAGGTTGAGAAGAATGGAAAGTGTTTCCCAAGGCATTCAGTTTTGACATAA 573 43.98 MNHLFELPEKICYVQCGICTTILLVSVPCSSLSMEVTVTCGHCSSLLSVNMMRATLVPLHFLSSLSRNLPKEGCREMSSGKLFDSFIRSNLKFSEYEVEEGLIPVTPPSVNKPPEKRQRVPSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAKNWANFPPTIQQKEDPQNTQIPEVEKNGKCFPRHSVLT 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9207257 9210078 - Cp4.1LG01g15370.1 Cpe01g01541 462854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01541 190 CDD HMG-box 119 165 - -
Cpe01g01541 190 PANTHER PROTEIN YABBY 6-RELATED 1 172 IPR006780 GO:0007275
Cpe01g01541 190 Pfam YABBY protein 8 160 IPR006780 GO:0007275
Cpe01g01541 190 SUPERFAMILY HMG-box 104 164 IPR036910 -
Cpe01g01541 190 Gene3D High mobility group box domain 107 173 IPR036910 -
Cpe01g01541 190 PANTHER AXIAL REGULATOR YABBY 4 1 172 - -
Cpe01g01541 190 MobiDBLite consensus disorder prediction 163 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01541 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101211641 309.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01541 Cpe-Chr1:9207257 Cpe05g00237 Cpe-Chr5:1340984 1.55E-32 dispersed
Cpe01g01541 Cpe-Chr1:9207257 Cpe11g00017 Cpe-Chr11:100544 1.56E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g669 . . . . . . . . . . . . . . . . Cpe01g01541 Bhi07g01746 . . Lac13g0189 Hepe10g1628 . . Cla05g02553 Cam05g2741 Cec05g2773 Cco05g2813 Clacu05g2742 Cmu05g2594 Cre05g2709 . . . . Lsi04g00561 Csa05g02325 Chy10g00892 Cme10g00537 . Blo11g00921 . . . . . . . . . Cma04g01741 Cma05g00022 Car04g01775 Car05g00019 . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g00237 . 209 369 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 1.6e-43 172.9
Cpe13g00219 CST 57 212 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 5.3e-42 167.9
Cpe05g00455 . 1 166 C2C2-YABBY Transcription Factor Family AT1G08465 66.5 6.7e-54 207.6
Cpe08g00754 CST 14 183 C2C2-YABBY Transcription Factor Family AT1G08465 52.8 9.7e-37 150.6
Cpe13g00219 CST 27 211 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 5.1e-50 194.9
Cpe05g00237 . 182 368 C2C2-YABBY Transcription Factor Family AT4G00180 57.7 6.7e-50 194.5
Cpe01g01541 . 1 160 C2C2-YABBY Transcription Factor Family AT1G23420 52.6 1.2e-37 154.1
Cpe11g01064 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 1.0e-61 233.4
Cpe07g01105 . 12 172 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 1.7e-56 216.1
Cpe18g00498 . 7 158 C2C2-YABBY Transcription Factor Family AT2G26580 68.4 1.6e-51 199.5
Cpe04g01191 . 7 156 C2C2-YABBY Transcription Factor Family AT2G26580 60.7 3.7e-48 188.3
Cpe05g00455 . 1 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.0 6.4e-48 187.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012058 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48871 PF04690 YABBY 3.90E-57 CL0114 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01541 Cpe_Chr01 FPKM 0.945342 1.16384 0.0 0.0 0.955118 0.783959 1.045699 0.403292 0.363962 0.523162