Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01541 ATGAACCATCTCTTTGAACTTCCTGAAAAGATTTGCTATGTGCAATGTGGAATCTGCACCACCATTTTGCTGGTCAGCGTGCCGTGCAGCAGCTTGTCGATGGAGGTGACCGTGACGTGCGGCCACTGCTCAAGCCTCCTTTCTGTTAACATGATGAGAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTCTATCTCGCAATCTGCCCAAAGAAGGTTGTAGAGAAATGAGTTCAGGGAAGTTGTTTGACAGTTTCATAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGTCACACCTCCCTCTGTAAACAAACCTCCTGAGAAAAGACAGCGTGTCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTGAAAACCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCTGCAAAAAATTGGGCAAACTTCCCTCCAACAATCCAACAAAAAGAAGACCCACAGAACACTCAAATTCCAGAGGTTGAGAAGAATGGAAAGTGTTTCCCAAGGCATTCAGTTTTGACATAA 573 43.98 MNHLFELPEKICYVQCGICTTILLVSVPCSSLSMEVTVTCGHCSSLLSVNMMRATLVPLHFLSSLSRNLPKEGCREMSSGKLFDSFIRSNLKFSEYEVEEGLIPVTPPSVNKPPEKRQRVPSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAKNWANFPPTIQQKEDPQNTQIPEVEKNGKCFPRHSVLT 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9207257 9210078 - Cp4.1LG01g15370.1 Cpe01g01541 462854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01541 190 CDD HMG-box 119 165 - -
Cpe01g01541 190 PANTHER PROTEIN YABBY 6-RELATED 1 172 IPR006780 GO:0007275
Cpe01g01541 190 Pfam YABBY protein 8 160 IPR006780 GO:0007275
Cpe01g01541 190 SUPERFAMILY HMG-box 104 164 IPR036910 -
Cpe01g01541 190 Gene3D High mobility group box domain 107 173 IPR036910 -
Cpe01g01541 190 PANTHER AXIAL REGULATOR YABBY 4 1 172 - -
Cpe01g01541 190 MobiDBLite consensus disorder prediction 163 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01541 Cpe-Chr1:9207257 Cpe05g00237 Cpe-Chr5:1340984 1.55E-32 dispersed
Cpe01g01541 Cpe-Chr1:9207257 Cpe11g00017 Cpe-Chr11:100544 1.56E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48871 PF04690 YABBY 3.90E-57 CL0114 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01541 K25796 - csv:101211641 309.686