Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe01g01546 | ATGGAAGAAATGTACGGCTTGCAGTCCACGGCGGAGTATTCGGATAAGGCGTTGATGTCGCCGGAGAATCTGATTTTTCCGCCGGATTATCAGAGCCTTTTAGTGAGCTCCGGAGCGTTTCGTGATCGGATTCCAGTGTTTGGATCCAACGATTTGCTTTCGGCGGCGGCGTCCGCGATTTCGGAAGCTGAAGCAGTATCGATCACGCCGGAAATTCAAGGTGAAGAAGATATGGTGAACGTGATCAAAGCGAAAATTTCTTCTCATCCTACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCAGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAACCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTAGGCGCAGATCCTGAGCTCGATGAATTCATGGAAACGTACTGCGATATGTTGGTGAAGTATAAATCAGATCTCAAAAGGCCTTTCGACGAAGCAACTACATTCTTGAACAAGATCGAACTGCAACTTAGTAGCCTCTGCACTGGCGCCTTCTCCAGAAGCCATTCCGGTCTGTATTGTTTAATTTCTCATTCTCTTTGA | 600 | 47.83 | MEEMYGLQSTAEYSDKALMSPENLIFPPDYQSLLVSSGAFRDRIPVFGSNDLLSAAASAISEAEAVSITPEIQGEEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQETDLCNRHAVTTCLGADPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSSLCTGAFSRSHSGLYCLISHSL | 199 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9228197 | 9230224 | + | Cp4.1LG01g15490.1 | Cpe01g01546 | 462859 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe01g01546 | 199 | Pfam | KNOX2 domain | 134 | 180 | IPR005541 | GO:0003677|GO:0005634 | |
| Cpe01g01546 | 199 | Pfam | KNOX1 domain | 82 | 122 | IPR005540 | GO:0003677|GO:0005634 | |
| Cpe01g01546 | 199 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 | 1 | 186 | - | - | |
| Cpe01g01546 | 199 | SMART | KNOX1_2 | 80 | 124 | IPR005540 | GO:0003677|GO:0005634 | |
| Cpe01g01546 | 199 | SMART | KNOX2_2 | 130 | 181 | IPR005541 | GO:0003677|GO:0005634 | |
| Cpe01g01546 | 199 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 186 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe01g01546 | Cpe09g00513 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g01546 | Cpe-Chr1:9228197 | Cpe04g01564 | Cpe-Chr4:12250525 | 9.50E-48 | dispersed | |
| Cpe01g01546 | Cpe-Chr1:9228197 | Cpe11g00023 | Cpe-Chr11:125984 | 5.72E-76 | wgd | |
| Cpe01g01546 | Cpe-Chr1:9228197 | Cpe09g00513 | Cpe-Chr9:3419266 | 4.06E-127 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe01g01546 | - | - | csv:101211876 | 343.584 |