Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01547 ATGTGGTGGGGGGCATTGCAGTACTGCTCATGGGATATCGTCGAGGGAGGGAGGAGGTTCTTATTAACCTCGAAGCTCTCGTGGGTCATTGCAGAAAGTGGATTTATGTCGCCGTTCAGTCTTGTCTATTCTGACAATGAAGGAGCTGTCTCGTCGGATGAAGAATTGAGCGGAGGAGAGATGGAAGTTGTGGAGCCGGAAACTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTCGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAGACACTCCTTGAATGGTGGAACGTTCACTATAGATGGCCATATCCTACGGTATGTTTGCTTATAAGCTTACAGGGCCAAAATCCGCTGCTTTTAATCATGCAGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGACAATATGCAGTTTGAGGGAATGGATGGGCTTTCTTCTAGTAGATTATTCAGAGAGGACTGA 597 45.39 MWWGALQYCSWDIVEGGRRFLLTSKLSWVIAESGFMSPFSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9233599 9234767 + Cp4.1LG01g15550.1 Cpe01g01547 462860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01547 198 ProSitePatterns 'Homeobox' domain signature. 152 175 IPR017970 GO:0000981|GO:0006355
Cpe01g01547 198 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 35 133 - -
Cpe01g01547 198 SMART ELK_2 76 97 IPR005539 GO:0003677
Cpe01g01547 198 Gene3D - 94 186 - -
Cpe01g01547 198 ProSiteProfiles 'Homeobox' domain profile. 148 177 IPR001356 GO:0003677
Cpe01g01547 198 Pfam ELK domain 76 97 IPR005539 GO:0003677
Cpe01g01547 198 Pfam Homeobox KN domain 146 173 IPR008422 GO:0003677|GO:0006355
Cpe01g01547 198 SUPERFAMILY Homeodomain-like 97 186 IPR009057 -
Cpe01g01547 198 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 146 196 - -
Cpe01g01547 198 ProSiteProfiles ELK domain profile. 76 96 IPR005539 GO:0003677
Cpe01g01547 198 SMART HOX_1 98 181 IPR001356 GO:0003677
Cpe01g01547 198 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 133 - -
Cpe01g01547 198 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 146 196 - -
Cpe01g01547 198 CDD homeodomain 108 178 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01547 Cpe-Chr1:9233599 Cpe11g00023 Cpe-Chr11:125984 8.91E-48 dispersed
Cpe01g01547 Cpe-Chr1:9233599 Cpe09g00513 Cpe-Chr9:3419266 4.85E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48872 PF05920 Homeobox_KN 1.70E-10 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01547 - - csv:101211876 235.728