Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01579 ATGGCGGAGACCGGCGTCTACGGCCGTTTTCCAGGGAGTTTGGACCCGACAGCCCAAGAGTTTCGGCCGAGATATTCGACTACTGTGTTTATGCCGCAACCCCACCAGGTTTTCTTTCCGTACTCCTCGCCATATCCACCAATCGGTGATGTCCCTCTTCTGCCGTTCTGCGAGGGTGATGTAGGTTACGCGCCGTTTCCAACTCCGGCGCCGGCGTATATACCAGTGCGGTCGTTAGGACAGGCGGTGTCGTCGGTTGCGACTCGGTCGTTGGTGGTGAGTTTAGTTCCTTGCGATGTAAGCGAGACGATGGTGAGAAGAGAATTGGAGGTGTTTGGGGAGGTTCGAGGAGTGCAAATGGAAAGGGTTAAGGAAGGGATTGTTATCGTCCATTTCTATGACATTCGGCACGCCGAGAGGGCCTTGCGTGAGATTCGGGATCAGCACATGCACCATCAGTGTCGCCTTCGTAACTATTTTAACAACAGCAACAACAACAACAACAACAACAACAACAACAATAACCGTTTCTTCTTTTCAAATTCCGCTCCTCAATTCCCTGATTTCCCTCTCCCTCGTCCTTCTCCAGCGCCTGGCCTCATCGCCGGCCATGCTGTTTGGGCCCAGTTCGTCGTTCCGGCCAGTAATGCTGTTCCGGCTGGGAAGAATCAAGGCACTATCGTCGTCTTCAATTTGGACTCCACTGTTTCCACTTCCTGTCTCAGAGAAATCTTCGAGGCTTTTGGTCCTGTTAAGGAGTTAAGAGAGACGCCATTGAAGATGCAGCAAAGGTTCGTTGAGTTTTTCGACATTAGGGATGCTGGGAAGGCTCTAAAGGAGATGAACGGAAAGGAAATCAATGGGAAATCAGTAGTGATTGAGTTCAGTCGGCCGGGCGGCCATGGCAACAAGTTTTTCAATGCTAACTTGACCGCTCCGGCCATCTGCGGCTCGAATAATATATACTCTAGAAGTCTGAAGTGCCCACCCTCTCAGCCTCCGCCGCCACCGCCTCCTCCCACGCCGCCGAGGAATTTCTCAGGTGGGGCAGCTTCAAATGTTCCACCGCGCTGGTATTACTCAAAACCCCATAGTTTCTCCAGGAAACTGAATCCGCGGAAGGGGAGTCGAAGCCCGAGAAACCCCAGGAAGAGCTTGGAGTCCGTCGATGTGAATGGAAAAATGGCGTCTCTCGATTTGGAAGGCGGCGGTGCGTGCAATAAAATCGATGAGAGAGAATCGTGTGAGACATTGAGAAAGAATTCAAAGATCAGCCACAGTAGTCCCGCTGTTGCTGCCGACCAACCGCCACAGCAGCTGCAGCCCAGTAGGAATAAGCTAAGGAAATGTAGACAATCCAGGAAGTTCGACTCTCGATTCCTTATAAACGACAACAACATGGTGGAATCCGATTGCAGAGATTCAAGAACCACTGTGATGATCAAGAACATCCCCAACAAATACAGTCAGAAGTTGTTGTTGAACATGTTGGACAACCACTGCATTCACTGCAACGAGCAGATGGGCGACGGGCATAGCCAGCCACTTTCCTCCTACGATTTTGTATATCTACCCATTGATTTCAACAACAAGTGCAACGTTGGATATGGGTTTGTAAACATGACCTCGCCGGAGGCCACATGGAGGCTGTACAAGGCGTTTCATCTTCAACCTTGGGAGGTTTTCAATTCCAGGAAAATCTGTGAAGTCACCTATGCTAGAGTTCAGGGACTGGAAGCACTAAAGGAGCACTTTAAGAACTCAAAGTTTCCATGCGAGATGGACCACTACCTGCCAGTGGTGTTTTCACCGCCTCGGGACGGGAGGGAACTGACGGAGCCACTGCCCATTGGCGGCCAGAAGCAGCAGCCTATCACCATTGGTCTCTCGACTACTCCATCTTCTGGCAATGATGAGATGGACGGCGAAGATGATGGGGCTGCTGCAACTGCGACAACAGTGGTTGACCAACAGGAGGAAGCCGTGAATGGAAGCAGCAGCAGCAGCGGCAGCAGCAGTGGCAGCAGCATTGGGTGCAGTAGTAGTAGCCAAAGGTGCGGTGGCGTTGATGAAGAATACGACGGTGATCAGTATGAACAAGCACAGCTACCACTTGGGTTGGGTGACTTGCCTGGTTGGCGCCAATGGGTTCTTCCACATAGCAGCAGCAGGCAGCAGATGCAGATGCAGCAGCAGCAGCAGCCA 2205 51.75 MAETGVYGRFPGSLDPTAQEFRPRYSTTVFMPQPHQVFFPYSSPYPPIGDVPLLPFCEGDVGYAPFPTPAPAYIPVRSLGQAVSSVATRSLVVSLVPCDVSETMVRRELEVFGEVRGVQMERVKEGIVIVHFYDIRHAERALREIRDQHMHHQCRLRNYFNNSNNNNNNNNNNNNRFFFSNSAPQFPDFPLPRPSPAPGLIAGHAVWAQFVVPASNAVPAGKNQGTIVVFNLDSTVSTSCLREIFEAFGPVKELRETPLKMQQRFVEFFDIRDAGKALKEMNGKEINGKSVVIEFSRPGGHGNKFFNANLTAPAICGSNNIYSRSLKCPPSQPPPPPPPPTPPRNFSGGAASNVPPRWYYSKPHSFSRKLNPRKGSRSPRNPRKSLESVDVNGKMASLDLEGGGACNKIDERESCETLRKNSKISHSSPAVAADQPPQQLQPSRNKLRKCRQSRKFDSRFLINDNNMVESDCRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQMGDGHSQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHLQPWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMDHYLPVVFSPPRDGRELTEPLPIGGQKQQPITIGLSTTPSSGNDEMDGEDDGAAATATTVVDQQEEAVNGSSSSSGSSSGSSIGCSSSSQRCGGVDEEYDGDQYEQAQLPLGLGDLPGWRQWVLPHSSSRQQMQMQQQQQP 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9645947 9649354 - Cp4.1LG01g15880.1 Cpe01g01579 462892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01579 735 MobiDBLite consensus disorder prediction 326 394 - -
Cpe01g01579 735 CDD RRM1_EAR1_like 88 156 - -
Cpe01g01579 735 SMART rrm1_1 90 157 IPR000504 GO:0003723
Cpe01g01579 735 SMART rrm1_1 226 294 IPR000504 GO:0003723
Cpe01g01579 735 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 291 IPR000504 GO:0003723
Cpe01g01579 735 Gene3D - 84 161 IPR012677 -
Cpe01g01579 735 CDD RRM3_EAR1_like 476 577 IPR034458 -
Cpe01g01579 735 MobiDBLite consensus disorder prediction 328 345 - -
Cpe01g01579 735 MobiDBLite consensus disorder prediction 718 735 - -
Cpe01g01579 735 MobiDBLite consensus disorder prediction 608 735 - -
Cpe01g01579 735 SUPERFAMILY RNA-binding domain, RBD 225 555 IPR035979 GO:0003676
Cpe01g01579 735 MobiDBLite consensus disorder prediction 417 445 - -
Cpe01g01579 735 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 163 IPR000504 GO:0003723
Cpe01g01579 735 MobiDBLite consensus disorder prediction 421 445 - -
Cpe01g01579 735 PANTHER TERMINAL EAR1-LIKE 1 29 671 - -
Cpe01g01579 735 Pfam RNA recognition motif 2 476 586 IPR007201 -
Cpe01g01579 735 PANTHER RNA BINDING PROTEIN 29 671 - -
Cpe01g01579 735 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 298 IPR000504 GO:0003723
Cpe01g01579 735 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 165 - -
Cpe01g01579 735 MobiDBLite consensus disorder prediction 651 687 - -
Cpe01g01579 735 MobiDBLite consensus disorder prediction 623 637 - -
Cpe01g01579 735 SUPERFAMILY RNA-binding domain, RBD 72 156 IPR035979 GO:0003676
Cpe01g01579 735 Gene3D - 220 304 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01579 - - - cpep:111791714 1333.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01579 Cpe-Chr1:9645947 Cpe10g00111 Cpe-Chr10:739090 2.21E-22 dispersed
Cpe01g01579 Cpe-Chr1:9645947 Cpe11g00040 Cpe-Chr11:208384 0 wgd
Cpe01g01579 Cpe-Chr1:9645947 Cpe07g00034 Cpe-Chr7:175288 1.58E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01579 Cpe_Chr01 FPKM 5.701542 7.182538 0.390114 0.323703 5.239443 5.630321 7.606622 0.061269 0.0 0.0