Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01587 ATGTCTGAGAATCATGATCCAGAGACGGCACTACAGAGTTCAGGAAATGGAGCTGTAGGGGTGGAAACTGTGCTTAATGTTAATGTTAATGTTGGGGAGTTATCTTCTGAGACTGCCGCGGACGCTACTTCGGAGAATGACTCCGTTTTGCAGTCCTCTGAAGTGTCCAGTGGATTTTCGCCTTCTGTGCCGAACCAGGGATCAACATTGTCGCCAGTGGCTCCTCTTACTGAAGGTGCAGAGAACTCGGGACAAGATGACCCTGATGGTACTGTAGTAGTCGAAGATGCTGCAAAAGACGATATGTTTGTGGACTGCCCGGACGAGTTAGCTGGCAATGCTGATGGCAAAGAAGCAGTAGCAGCTACTGAAACTCAAGGTAGTTTGATGGAGGAAACGCCTTGTGATATGCAACAGGAAATACAATATGAGATAGAAAAGGTTTCTCTGATGGACGAGGTGGAAAACACGAGGGCCACTCTGAATGGGACCATTTTCGAGAAAGAAAATGTCGTACACGATTTTGAGAAAGAAAGAGAAGCTTTTGTGCAAGAACTTCTTATCATTTGTGGCCAACTCAAGACTGCTACTAATCGACAGTCATTGGTCAAAGTTACTGGCAATCAGTTGAATGAGAGTCTTGATTTGCATGGAATTGAGCACATGGAAGAGAACACTCTGATTTCTAATACCACATTGAAAGACTTGGTAAATGAATGCTCACAATTGGTTAGTAGGACTTTAGATGAACGATTGCAGTATGAGGCTACTATAGGAGAACTCCGTCATAACCATTTAGTGAAGGATCAAGAGATTGAGTATCTTAATGCAAAAGTTGTTGAATATATGGTGTCTGATGAAGTTGTTCGCTCTTACACGAACTCAATTGAAGATTCTGTGAAAGTTTCGTCTGAAAAGGAGAGGGAAATGGAAGCCACATTAGATAGAGTGTTAACGTCTCTCAACTCGATATTGAATCAGCAACATCTTCTTGACGATTCTTTATCAGAAAAAACACTTCATGTTGAAAGAAATACTTCTCTGTTAATTGATAATTATAACAAAATCCTTCTGAAAATTAATCAACTCCAATCATGTTTAACCGGGGCAGAGTCAGACATAATCTCCACTGAAGCTGGAGCAGTTTTGGCCACTGCCCATACTGAGTTAATTGAGCTCAAAGCTAAAGAGGTCAGCAATGCTGAAAAAATGTATCATCTGGAAGATGAAAATAGAAGATTGGCAGATGAGATAGACAATTACAGATTGACAGTTGAGACTGTTAATGGTGAACTTGAAAAGGCAAAAAGTGAGCTGGAGCAAGAAAGGATAAGGTGTGTTAATACCAAAGAGAAGTTAACAATGGCTGTGACAAAAGGCAAGGCATTAGTACAGCAACGTGATGCATTGAAACAGTCTCTAGCTGAAAAAAGTCGGGAGCTTGAAAAGTATTCTGTCGAACTACAAGAGAAATCAAATGCTTTGGAGACTGCTGAACTAATTAAGGTTGACTTGGCTAAAAGTGAAACTTTAGTTGCATCACTTCAGGAAAATCTGTTGCAAAGGAATATGGTCCTCGAAAGTTTTGAGGATGTTATATCTCAAATTGAAGTTCCTCGGGAACTTAAATCAATGGACAGTATGCAAAGACTCAAGTGTCTTGTGGATGAGAAGAAAGTTCTGGAGGCTATTTTATTGGAGTTTCAGAAGTTAAAAGATACTGTAAACTTATCTGATTGGCCGGATTTGATTGCACCTTATGACCTGAAATCTTCTGTCTGTTGGCTTAAGGAATCATTTTTTCAGGCTAAAGATGAAATAATGGTCTTGCAAGATGAACTTGCTAAAACTAAAGATGCAGCACAAGGAGAGATTGATCGCATAAGTGCTTTACTTTTAATTAAATTACAGGAAACGGACTATCTCCAGGAGCAGTTGGATGACCTTTTAAGCAAATATGAAGAAGTCAAGATAAAAATGCATCAGACATCGTTGGAGAAGGCTCAACTCATAAACATGTTACAAGAAGAATCTGGAGTGACAACAGATGATGGAGGGGTCAGTGAAACTTCGTTGGACTTGAACTTGCTTGTTTACAGATGCTTTCAGAGGATAAAAGAGAAGGCTTTTGCATCTGCTGAAATCTCAGGTGAATACGTGGAATCTTTTGAAAAGGTTCAAGCTCTTTTATATGTCAGTCGTCAGGATTTGACGCTCTATGATATAATTCTAGAAGAGGAGTCTTCTAATTTGAGTAATTGCTCGAGTAGGTTAAGATCAGTATCTCAAGAACTTGGAGAAGCGAAAGAGGAAAATGACTCTTTGCAGGGGGATTTTCAAAGATTAGAGGAGAAATATGCCTTGCTAAGGGAAAAGTTGTCCTTGGCTGTTAAGAAAGGCAAAGGACTGGTTCAGGATAGGGAAAATATGAAAAGTGTCTTGGATGACAAGAACATAGAAATAGAGAAGTTGAAACCACAATTAGATAGTCTAGAGTCGACAGTTGCTAATTGCAGAAATCAAATCAATTTGTTGTCTATTGATGCACAACGCATTCCGGAGTTGGAGTCTGAACTTGGCATCTTGGAGGACAAATGTAATCAATACGGGCAGTTCTTGTTGGAGAGCAATGATATGTTACAGAAAGTAAATGAATCAATTGATGGAATTGTTCTTCCCATTAATATGGTTTTTGAAGAGCCTATAGCTAAGGTGAAGTGGATTGCAGATTACATTAGGGAATCTCATGATGCTAAGATACGTACGGAACAAGAATTGGAGAATGTTAAAGAGGAGTCGAGTACTATGGAAATTAAATTAGGAGATGCTTTAGCTGCTATGAAATCATTGGAAAATGCACTATCATCTGCTGAGAACAACATTTTTCAGCTTTCTGAGGAGAAAAGGGAAATAGAATCTAGTAAGATACATATTGAACAGGAATTAGAGAAAACATTAAATGAAGCCTATGCACAGTCCAGCAAGTCTGCGGAAGCTTCATTGTCTCTGAAGCTACTTCAAGAGTCGTTATCACTGGCAGAAAATAAAATATCTGTGCTTGTCAGAGAGAAAGAAGAAGCTGAAGTTTGTAAACTCAATGCAGAGATAGAGTCTAAAAAAGTAAAGGAGGAAGTGGCTGTCCAGACAGATAAATTGGCAGAGGCCCAAGGAATTATAAACACATTAGAAAAGATTTTAACTGAGCTTGAGACCAATGTTGCTTTGCTAACGGAACAGAATGCTGAAGCACAAAGTGCTATAGAGAAGCTAGAGACAGAACAAAAGGTATTGCAAGAGGAAGTCAGTTCTCAAGCGAGAGAAGTTGTTGAGGCGACAGAAACAAGAAAATCTTTGGAAGATTCATTATTTAAGGCAGAAAGTAAAATTTCTATAATTCAAGGTGAGAGGAGAAATTCTGAAAATGAGATATTTTCTCTAAATTCCAAATTAAATGCATGCATGGAAGAGTTGGTTGGGACGAATGGCAGCTTACAGAGCAGATCTGCAGAGTTTGCGGGCTACCTCAATGATCTTCATAAGTTTATTGCAGATGAGACATTGTTGACCGTGGTGACAGGATGCTTTGAGAAGAAACTTAAGAGTCTAAGAGAGATGGATATCATTTTGAAGAACACCAAGGCTTGTCTAGTTAACAGTGGCATAATAGATTCTCATGATCACCATGCTGTTAAGGATCCGAATGCTAAGGAATCCCTTTCTCATGGAAAGCTCCTTGATTTTGCTGTTGAAAATGAAAGTGATAAGGTGGTTGTTGAAGATGATGTTGGTAATATTTCATCATCTTTTAGAAAGATTATGGAAGAAATCTGGTTAAAGAACAAGAAGTTCACAGATTATTTTGAAGGTATCTCCTCTTCAATGGATGGGTTTATTGCTGATCTGTTAAAACAAGTGGAAGCAACAAGAGAGGAAGTAGCTTTTGTGTGTGGACACGTTGAATCCTTGAAAGAGATGGTGAAGAATCTCGAAATGCATAAACAGGAACAAGAACATACCAAAGTGATGCTAGAAGATGATGTTTCCCTTCTATTGTCTGCCTGTATTGACACAACAAAAGAGCTTCAGTTTGAAATGACCAACCATCTACTTCTACTCAGCTCTATTCCCGAACTTGACAACTTGAAGGATACCATATCCATGGAAAGTAGTGAGACTAGTGGAGCATCACCTGCAGAGTGTCGAGCAAAATCATCTAGTAGCAAATCAGCTTCCGCTGCAGAACAATTATTATCTGCTAGCAGAAAAGTTAAATCTATAGTTAAACAGTTTGAGAGCACCAGCAAGTTTGCAGCTTGTAGAATTCAAGATATGCAGCATATATTGGAAATAACTGAGGCAACTACTGAGAAAATTAGAAAGGAAAAGGACTTGAACCAAAATATGGTAGTTAAGTTGGAGACTGATTTACAACTATCGCAGAGTTCCTATGTTGAACTTAGTCGTCAACTGGAGACTTGTCAAGCAAATAAAGAAAAGTTAAAAGAAAGGGAGGCTGAAGTTTCATCATTGTATAATAGTTTGTTGGTGAAAGAACAAGAGGCAGAAGGCTGCGTTTTGTCAACAATGCAAATGGAAGCTCTCTTTAAGAAGGTTAGAGGGATTGAGATCTCTTTGCCAGAGTCAGAATACCTAGATGTGGAACAATATGATTCAACTGATGTAAAGAAGCTCTTTTACCTTGCTGATTATGTTTCTGAGTTACAGAATCAGTTCAACTTACTATCTCATGACAAGCAAAAGCTGCAGTCTACAGTGTCCACACAAATAATTGCAATTGAACAGCTGAAAGAGGAGGTTGATAGAGCATCGAGGTATCAACTTGATTCAGAGGAGATGAAGAAAGATCTCTCAGAGCTTTCATATTCTTTAGAACAAATTATTAGTTTGTTGGATAGTAACTACAGTGGAGATTCAAAGTCAGAAGGCTTGAAGGGACTAGTAAGAATATTAGAAAGGCAGATCCTGGATATGCTCTCCGAATCTGAAAATTCAAAAATCAAATTTGAGGAATTGAGTGGGAAGTTAATAGGGAGCCAAAACGTCGTGGATGAACTAACTACTAAGAATAAGCTACTTGAAGAGTCACTTCAAGGACGGACATCTCAACCAGAGATAATCAAAGAAAGGAGCGTCTTTGAAGCACCTTCTTTTCCTTCTGGATCAGAGATATCAGAGATTGAAGATGCAGAACCAGCTGGGAAAAGTGCAATACCACCTGTTCCATCAGCCTCAGCTGCCCATGCTCGAACTTTGCGGAAAGGTTCAACTGATCATCTTGCGATTGACGTAGAAACAGAATCTGTTCATTTAATAGGAAATGGCATGGAAATTGATGAAGACAAAGGTCATGTGTTCAAATCACTCAATGCATCAGGTCTCATCCCAAGGCATGGAAAACTTATTGCCGATCGAATTGATGGAATTTGGATTTCTGGCGGTCGAATTTTAATGAGTCGTCCAGGCGCAAGGCTAGGCCTCATAACCTATTGGTTCGCTCAGAAGGGTAATTCTCTGTCCAAATTTGGTGAGTGGGATGAAAAACATCCTGCTCCAGCTGAAGGGATCACAGTGATCTTCAACAGGGCACGAGTTAATAGTAAGAAAGAAGGAGGAACTCCAACAAATATGAAGCTGCCAAGAAGAAAGCAGAAAGGATGGCATTGGCATTGGCATTGCTGCTTTTGGTAG 5709 39.27 MSENHDPETALQSSGNGAVGVETVLNVNVNVGELSSETAADATSENDSVLQSSEVSSGFSPSVPNQGSTLSPVAPLTEGAENSGQDDPDGTVVVEDAAKDDMFVDCPDELAGNADGKEAVAATETQGSLMEETPCDMQQEIQYEIEKVSLMDEVENTRATLNGTIFEKENVVHDFEKEREAFVQELLIICGQLKTATNRQSLVKVTGNQLNESLDLHGIEHMEENTLISNTTLKDLVNECSQLVSRTLDERLQYEATIGELRHNHLVKDQEIEYLNAKVVEYMVSDEVVRSYTNSIEDSVKVSSEKEREMEATLDRVLTSLNSILNQQHLLDDSLSEKTLHVERNTSLLIDNYNKILLKINQLQSCLTGAESDIISTEAGAVLATAHTELIELKAKEVSNAEKMYHLEDENRRLADEIDNYRLTVETVNGELEKAKSELEQERIRCVNTKEKLTMAVTKGKALVQQRDALKQSLAEKSRELEKYSVELQEKSNALETAELIKVDLAKSETLVASLQENLLQRNMVLESFEDVISQIEVPRELKSMDSMQRLKCLVDEKKVLEAILLEFQKLKDTVNLSDWPDLIAPYDLKSSVCWLKESFFQAKDEIMVLQDELAKTKDAAQGEIDRISALLLIKLQETDYLQEQLDDLLSKYEEVKIKMHQTSLEKAQLINMLQEESGVTTDDGGVSETSLDLNLLVYRCFQRIKEKAFASAEISGEYVESFEKVQALLYVSRQDLTLYDIILEEESSNLSNCSSRLRSVSQELGEAKEENDSLQGDFQRLEEKYALLREKLSLAVKKGKGLVQDRENMKSVLDDKNIEIEKLKPQLDSLESTVANCRNQINLLSIDAQRIPELESELGILEDKCNQYGQFLLESNDMLQKVNESIDGIVLPINMVFEEPIAKVKWIADYIRESHDAKIRTEQELENVKEESSTMEIKLGDALAAMKSLENALSSAENNIFQLSEEKREIESSKIHIEQELEKTLNEAYAQSSKSAEASLSLKLLQESLSLAENKISVLVREKEEAEVCKLNAEIESKKVKEEVAVQTDKLAEAQGIINTLEKILTELETNVALLTEQNAEAQSAIEKLETEQKVLQEEVSSQAREVVEATETRKSLEDSLFKAESKISIIQGERRNSENEIFSLNSKLNACMEELVGTNGSLQSRSAEFAGYLNDLHKFIADETLLTVVTGCFEKKLKSLREMDIILKNTKACLVNSGIIDSHDHHAVKDPNAKESLSHGKLLDFAVENESDKVVVEDDVGNISSSFRKIMEEIWLKNKKFTDYFEGISSSMDGFIADLLKQVEATREEVAFVCGHVESLKEMVKNLEMHKQEQEHTKVMLEDDVSLLLSACIDTTKELQFEMTNHLLLLSSIPELDNLKDTISMESSETSGASPAECRAKSSSSKSASAAEQLLSASRKVKSIVKQFESTSKFAACRIQDMQHILEITEATTEKIRKEKDLNQNMVVKLETDLQLSQSSYVELSRQLETCQANKEKLKEREAEVSSLYNSLLVKEQEAEGCVLSTMQMEALFKKVRGIEISLPESEYLDVEQYDSTDVKKLFYLADYVSELQNQFNLLSHDKQKLQSTVSTQIIAIEQLKEEVDRASRYQLDSEEMKKDLSELSYSLEQIISLLDSNYSGDSKSEGLKGLVRILERQILDMLSESENSKIKFEELSGKLIGSQNVVDELTTKNKLLEESLQGRTSQPEIIKERSVFEAPSFPSGSEISEIEDAEPAGKSAIPPVPSASAAHARTLRKGSTDHLAIDVETESVHLIGNGMEIDEDKGHVFKSLNASGLIPRHGKLIADRIDGIWISGGRILMSRPGARLGLITYWFAQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQKGWHWHWHCCFW 1902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9698787 9707157 - Cp4.1LG01g15870.1 Cpe01g01587 462900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01587 1902 PANTHER - 77 974 - -
Cpe01g01587 1902 PANTHER - 1144 1838 - -
Cpe01g01587 1902 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 1840 1870 IPR008700 -
Cpe01g01587 1902 Coils Coil 1052 1107 - -
Cpe01g01587 1902 Coils Coil 1319 1346 - -
Cpe01g01587 1902 Coils Coil 404 452 - -
Cpe01g01587 1902 Coils Coil 467 501 - -
Cpe01g01587 1902 Coils Coil 1003 1023 - -
Cpe01g01587 1902 Coils Coil 828 848 - -
Cpe01g01587 1902 PANTHER BNAA09G28150D PROTEIN 77 974 - -
Cpe01g01587 1902 PANTHER BNAA09G28150D PROTEIN 1144 1838 - -
Cpe01g01587 1902 SUPERFAMILY Tropomyosin 922 1180 - -
Cpe01g01587 1902 MobiDBLite consensus disorder prediction 36 92 - -
Cpe01g01587 1902 MobiDBLite consensus disorder prediction 1387 1407 - -
Cpe01g01587 1902 MobiDBLite consensus disorder prediction 36 78 - -
Cpe01g01587 1902 Coils Coil 1483 1503 - -
Cpe01g01587 1902 MobiDBLite consensus disorder prediction 1723 1749 - -
Cpe01g01587 1902 PANTHER BNAA09G28150D PROTEIN 973 1030 - -
Cpe01g01587 1902 Coils Coil 1571 1605 - -
Cpe01g01587 1902 PANTHER - 973 1030 - -
Cpe01g01587 1902 Coils Coil 912 988 - -
Cpe01g01587 1902 Coils Coil 751 799 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01587 - - - csv:101218359 2677.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01587 Cpe09g00563 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01587 Cpe-Chr1:9698787 Cpe02g00397 Cpe-Chr2:2213182 3.50E-12 dispersed
Cpe01g01587 Cpe-Chr1:9698787 Cpe09g00563 Cpe-Chr9:3884015 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1114 . . . . . . . . Cmo04g01902 Cmo18g00713 . Cma18g00726 . Car18g00674 Sed06g1718 Cpe09g00563 Cpe01g01587 Bhi07g01850 Tan04g0116 Cmetu10g1236 Lac13g0100 Hepe10g1555 . . Cla05g02625 Cam05g2815 Cec05g2851 Cco05g2882 Clacu05g2819 Cmu05g2667 Cre05g2783 . . Cone8ag0714 . Lsi04g00640 . . . . Blo11g00999 . . . . . . . . . Cma04g01803 . Car04g01816 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004326 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 5 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01587 Cpe_Chr01 FPKM 190.677795 195.875717 158.999908 164.857422 188.439789 189.344849 182.367996 46.305065 53.134747 44.998978