Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01588 ATGTATTATCAACTGGAGAAATTCTCTCATCAGGATTCTTTGGAGGTTTTGGAGGCGGATATTCAGTATGCAAATTCTCTGTATCTTAATCTTGATTTTTTATCCATTCAGGTACATCCGGAGGGAAAACAAAAACGAAATATATCCAGGCATGGAAGGAAGGCAACTATTAGGGACTTCTACGCTATAATATTGCCTTCGCTTCAGCGAATCCACGGTAGTTTGGATAAGTTGGACGATTTTGAGGAAGAGCATCGTTGGATTGAGATGCCTAGCAAGAAGAGAGGTGATAAAGACGGTAGACTCATGAACATCGATATGAAACGAGAAGACGAGTGTGGTATTTGTTTGGAGCCGTGCACGAAGATGGTTTTGCCTAATTGCTGTCATGCAATGTGCATCAAATGCTATCGAAATTGGAACATGAGGTCGGAGTCGTGTCCATTTTGTCGTGGCAGCTTAAAGAGAGTCAACTCAGAGGACTTATGGGTGCTTACCTGTAGCGATGATGTGGTTGATGCCGAAACCGTTTCCAAGGAGGATATGTTGTGCTTTCGTCGATATATAAACAGCCTGCCTAAAGACTATCCAGATGCACTCTTCGCTGTATATTCCGAATATCTAATTTAG 630 42.06 MYYQLEKFSHQDSLEVLEADIQYANSLYLNLDFLSIQVHPEGKQKRNISRHGRKATIRDFYAIILPSLQRIHGSLDKLDDFEEEHRWIEMPSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNMRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLCFRRYINSLPKDYPDALFAVYSEYLI 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9709064 9711741 - Cp4.1LG01g15900.1 Cpe01g01588 462901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01588 209 SUPERFAMILY RING/U-box 104 156 - -
Cpe01g01588 209 PANTHER F21J9.10 36 209 - -
Cpe01g01588 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 162 IPR013083 -
Cpe01g01588 209 Pfam Ring finger domain 111 151 IPR001841 -
Cpe01g01588 209 ProSitePatterns Zinc finger RING-type signature. 128 137 IPR017907 -
Cpe01g01588 209 SMART ring_2 113 150 IPR001841 -
Cpe01g01588 209 ProSiteProfiles Zinc finger RING-type profile. 113 151 IPR001841 -
Cpe01g01588 209 PANTHER RING FINGER PROTEIN 41, 151 36 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01588 - - - csv:101206911 373.629
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01588 Cpe09g00564 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01588 Cpe-Chr1:9709064 Cpe19g01012 Cpe-Chr19:7064031 5.01E-52 dispersed
Cpe01g01588 Cpe-Chr1:9709064 Cpe01g01591 Cpe-Chr1:9724403 2.82E-42 proximal
Cpe01g01588 Cpe-Chr1:9709064 Cpe11g00048 Cpe-Chr11:245630 2.43E-80 wgd
Cpe01g01588 Cpe-Chr1:9709064 Cpe07g00042 Cpe-Chr7:209713 1.66E-79 wgd
Cpe01g01588 Cpe-Chr1:9709064 Cpe09g00564 Cpe-Chr9:3895568 3.81E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1116 . . . . . Bpe10g00772 Bma14g01876 . . Cmo18g00712 . Cma18g00725 . Car18g00672 . Cpe09g00564 Cpe01g01588 Bhi07g01852 . . . . . . . . . . . . . . . . . Lsi04g00641 . . Cme10g00618 . . . . . . . . . . . . . Car04g01817 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001225 3 4 0 0 3 1 3 3 3 3 1 2 2 2 3 2 1 2 4 2 3 3 3 3 3 2 3 4 6 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01588 Cpe_Chr01 FPKM 5.889791 8.063118 10.755433 10.620826 19.458286 20.386089 16.622442 20.62431 20.921825 24.567135