Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01591 ATGTTCTCGAGAGATTACGGTGGATTTTGCATTCAAATGAGATTACAATACAGCCCATTTGCTCTCTTTTTTCTTCATTGGATTGAATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACATACTCTTGTACAAGGTGTACGTCGATGGACACCAACCGTTGGCGTCACCACGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGCTGTAATATACCCTTCACTTAGGCAACTTCGAAGTGGGCACCTCAAGTCGAAAGAAGAGACTTCTTCTAGGAAGAGAATAGAAGAACAAAAGGGGCCGTCTAATGAGGATCTTCAGAGGGATGAGGAGTGTGGGATATGCATGGAAAACTGCAGAGATGTTGTGTTGCCAAATTGTGGCCATTCGATGTGCCTCAGCTGCTTTCAGGACTGGAGTCCGAGGTCGCGTTCCTGTCCCTTCTGCCGCAACTGTCTAAATAGGTTGAGCGCCAGGGACCTGTGGGTTCTTACAAGCGACACCGACATTGTCGACTCGGAAACTCTTACCAAGGAAAATCTAATACATTTCTACCTTTATATAGAAAACCTGCCACTGTTTCAACCAGACGTGAGTATTTTAATACCAGATTACATGTTGTGA 645 44.96 MFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHLKSKEETSSRKRIEEQKGPSNEDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYIENLPLFQPDVSILIPDYML 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9724403 9727438 + Cp4.1LG01g15820.1 Cpe01g01591 462904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01591 214 ProSiteProfiles Zinc finger RING-type profile. 119 157 IPR001841 -
Cpe01g01591 214 SMART ring_2 119 156 IPR001841 -
Cpe01g01591 214 Pfam Zinc finger, C3HC4 type (RING finger) 116 158 - -
Cpe01g01591 214 ProSiteProfiles DHHC domain profile. 137 170 - -
Cpe01g01591 214 PANTHER RING FINGER PROTEIN 41, 151 3 214 - -
Cpe01g01591 214 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 3 214 - -
Cpe01g01591 214 MobiDBLite consensus disorder prediction 88 113 - -
Cpe01g01591 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 179 IPR013083 -
Cpe01g01591 214 SUPERFAMILY RING/U-box 110 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01591 - - - cpep:111794088 455.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01591 Cpe-Chr1:9724403 Cpe19g01012 Cpe-Chr19:7064031 1.87E-65 dispersed
Cpe01g01588 Cpe-Chr1:9709064 Cpe01g01591 Cpe-Chr1:9724403 2.82E-42 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1118 . . . . . . Bma14g01877 . . . . . . . . . Cpe01g01591 Bhi07g01857 . . . . . . Cla05g02628 Cam05g2819 Cec05g2854 Cco05g2887 Clacu05g2822 Cmu05g2670 Cre05g2787 Cone13ag1107 Cone19ag1095 Cone8ag0715 . Lsi04g00643 . . Cme10g00620 . . . . . . . . . . . Cma04g01807 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008688 0 4 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01591 Cpe_Chr01 FPKM 2.883581 2.882786 5.812396 6.380167 0.896224 0.816473 1.188599 2.370415 2.26865 1.964982