Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01606 ATGATTTGGAATTTGAGCTGCGGGCGTGCGGAAAGAATGAAGCTGACTCCAAAGGAGGTGGACAAACTAAATCTGCATAATGCGGGATTTCTAGCGCAGAAGCGTCTTGCGCGTGGCTTGAGGCTGAATTACGCTGAAGCTGTAGCACTTATTGCCTCACAGATTCTGGAGTTTGCTCGCAATGGTGATAAGAGCGTGGCGGAACTGATGGAATTGGGACCAAAACTCTTAGGAAGGAGACAAGTTCTTCCGGCTGTTCCACATCTTGTGGATTCTGTGCAGGTTGAAGGAACTTTTCGTGATGGGACGAAGTTAGTCACAGTTCATAAGCCCTTTGAAGAAGAAAATGGGAACCTAGAACTAGCATTGGACGGTTCTTTCCTTCCAGTGCCTTCGCCAGAAAAGTTCCCTTTGATGGAAAATAGTGCGGTGCCTGGTGAGATTATCTGTCCAGATGAAAAGATTGCTATTAATGTTGGACGGAAAGCTGTAATACTCAGTGTCGTCAATAAGGGAGACAGACCAATTCAGGTTGGCAGTCACTATCACTTTATTGAGGTGAATCATTCCTTGGTTTTTGATCGAGCAAAAGCTTATGGCATGCGTCTCAACATTTCAGCAGGATCAGCTACACGATTTGAGCCAGGGGATTCAAAATCTGTCATACTTGTAGCTATTGGTGGTAACCAAGTTATCAGAGGAGGAAATGACATTTGTGATGGTCCGGTTGATAGTTCTAAATTAAAAGATGTGATGGAAGCTGTGCATTCTAGAGGATTTGGAGATGTGGAAGAAAGCAATGCTAGAGAAGGCGTCACTGGAACGGATGATGAATTCACTACCAGACTTTCTCGTGAGGATTATGCCAACCGGTATGGTCCTACCACTGGTGACAAAGTTCGACTTGGTGACACAGATTTATATGCCGAAATCGAACATGATTTCACTGTTTATGGAGATGAGTGTGTATTTGGAGGTGGAAAGGTAATTAGAGAGGGAATGGGCCAATCCTGCGGGTTTCCGCCAGCTTTATCCCTTGATACTGTAATAACCAATGCAGTCATCATTGATTACTGCGGAATTTTCAAGACAGATATTGGTATCAAAGATGGCTTCATTATGACCCTTGGAAAAGCTGGCAATCCTGATGTCATGGATGGTGTTTGTCCTGATCTGATTATTGGGGCCAATACTGAGGTTATTTCTGGAGAAGGATTACTGGTTACTGCAGGGGCTATAGATTGTCATGTGCACTTCATATGCCCTCAACTGGCATATGAAGCAATATCAAGCGGCATCACAACGATGGTGGGAGGTGGAACTGGGCCTGCCGCAGGAACTTGTGCTACCACTTGTACGCCATCTCCAGTGCAGATGAGGATGATGCTGCAATCAACTGATGACCTCCCCTTGAATTTCGGCTTTACAGGAAAAGGGAACAGTTCGAAGCCAGATGAGCTATATGAAATAGTACGCGCAGGAGCAATGGGGCTGAAGTTACATGAAGATTGGGGAACTACTCCTGCTGCAATTGACAATTGCTTAACTGTGGCAGAAAAATATGACATTCAGGCACAATCATCCAAAATTTCTCTCCCAGAGTTTGAAGAAGTGAATATTCACACCGACACGTTGAATGAATCTGGATTTGTCGAACAAACAATCGCAGCTTTTAAGGGAAGAACCATACACACTTACCACAGTGAAGGAGCTGGAGGTGGTCATGCTCCAGATATCATTCGAGTGTGTGGTGTGAAAAATGTTCTGCCTTCATCAACTAATCCTACACGACCATTCACGATGAACACTGTAGATGAACACCTTGACATGCTGATGGTGTGCCATCATCTCGATCGCAATATTAAAGAAGATGTAGCTTTTGCGGAATCAAGGATAAGGAAGGAAACCATTGCTGCAGAAGATATTTTGCATGATATGGGGGCAATCAGTATCATATCTTCTGATTCACAGGCGATGGGTCGCATAGGAGAGGCAGGGAAGTTGGCTGATCTTGTTCTCTGGAAGCCATCCTTTTTTGGGGCAAAACCAGAAATGGTGATCAAAGGTGGTGTAATTGCATGGGCAAACATGGGTGATCCGAATGCAAGTATTCCTACTCCCGAACCGGTACTGATGAGGCCAATGTTTGGATCCTTTGGAAAGGCTGCAAGTACCCACTCAATTGCCTTTGTCAGCAAGGCAGCTGTTAACGTGGGAGTTAAAGCCATGTACGGACTCAAAAAGAGAGTTGAAGCTGTAGACAACATTAGGAAACTGACTAAACTTGACATGAAGTGGAATGACGCCCTTCCGCTCATCGAAGTAGATCCCGAAACGTACACGGTGAAAGCCGATGGCGAGGTTCTTACCTGCCAGCCTGCCGCTTCTGTTCCTCTTTCTCAAAATTACTTCCTTTTCTAG 2421 44.98 MIWNLSCGRAERMKLTPKEVDKLNLHNAGFLAQKRLARGLRLNYAEAVALIASQILEFARNGDKSVAELMELGPKLLGRRQVLPAVPHLVDSVQVEGTFRDGTKLVTVHKPFEEENGNLELALDGSFLPVPSPEKFPLMENSAVPGEIICPDEKIAINVGRKAVILSVVNKGDRPIQVGSHYHFIEVNHSLVFDRAKAYGMRLNISAGSATRFEPGDSKSVILVAIGGNQVIRGGNDICDGPVDSSKLKDVMEAVHSRGFGDVEESNAREGVTGTDDEFTTRLSREDYANRYGPTTGDKVRLGDTDLYAEIEHDFTVYGDECVFGGGKVIREGMGQSCGFPPALSLDTVITNAVIIDYCGIFKTDIGIKDGFIMTLGKAGNPDVMDGVCPDLIIGANTEVISGEGLLVTAGAIDCHVHFICPQLAYEAISSGITTMVGGGTGPAAGTCATTCTPSPVQMRMMLQSTDDLPLNFGFTGKGNSSKPDELYEIVRAGAMGLKLHEDWGTTPAAIDNCLTVAEKYDIQAQSSKISLPEFEEVNIHTDTLNESGFVEQTIAAFKGRTIHTYHSEGAGGGHAPDIIRVCGVKNVLPSSTNPTRPFTMNTVDEHLDMLMVCHHLDRNIKEDVAFAESRIRKETIAAEDILHDMGAISIISSDSQAMGRIGEAGKLADLVLWKPSFFGAKPEMVIKGGVIAWANMGDPNASIPTPEPVLMRPMFGSFGKAASTHSIAFVSKAAVNVGVKAMYGLKKRVEAVDNIRKLTKLDMKWNDALPLIEVDPETYTVKADGEVLTCQPAASVPLSQNYFLF 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9802155 9810601 - Cp4.1LG01g16080.1 Cpe01g01606 462919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01606 806 Pfam Urease, gamma subunit 13 111 IPR002026 GO:0016151|GO:0043419
Cpe01g01606 806 SUPERFAMILY Metallo-dependent hydrolases 411 806 IPR032466 -
Cpe01g01606 806 ProSitePatterns Urease nickel ligands signature. 409 422 IPR029754 GO:0016151
Cpe01g01606 806 Hamap Urease subunit beta [ureB]. 143 243 IPR002019 GO:0035550|GO:0043419
Cpe01g01606 806 Gene3D - 411 686 - -
Cpe01g01606 806 SUPERFAMILY Urease, beta-subunit 144 272 IPR036461 -
Cpe01g01606 806 ProSiteProfiles Urease domain profile. 411 806 IPR017951 GO:0006807|GO:0009039|GO:0016151
Cpe01g01606 806 Pfam Urease subunit beta-alpha linker domain 243 276 IPR040881 -
Cpe01g01606 806 SUPERFAMILY Urease, gamma-subunit 13 116 IPR036463 GO:0016151|GO:0043419
Cpe01g01606 806 Pfam Amidohydrolase family 407 663 IPR006680 GO:0016787
Cpe01g01606 806 TIGRFAM urease_beta: urease, beta subunit 144 244 IPR002019 GO:0035550|GO:0043419
Cpe01g01606 806 Pfam Urease alpha-subunit, N-terminal domain 282 401 IPR011612 -
Cpe01g01606 806 Gene3D Urease, beta subunit 143 273 IPR036461 -
Cpe01g01606 806 PANTHER UREASE 664 806 - -
Cpe01g01606 806 PANTHER UREASE 13 664 - -
Cpe01g01606 806 CDD Urease_beta 144 243 IPR002019 GO:0035550|GO:0043419
Cpe01g01606 806 ProSitePatterns Urease active site. 612 628 IPR017950 GO:0009039
Cpe01g01606 806 Gene3D - 700 806 - -
Cpe01g01606 806 PRINTS Urea amidohydrolase (urease) protein signature 590 607 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cpe01g01606 806 PRINTS Urea amidohydrolase (urease) protein signature 629 645 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cpe01g01606 806 SUPERFAMILY Composite domain of metallo-dependent hydrolases 282 459 IPR011059 GO:0016810
Cpe01g01606 806 Gene3D - 16 136 IPR036463 GO:0016151|GO:0043419
Cpe01g01606 806 Hamap Urease subunit alpha [ureC]. 281 806 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cpe01g01606 806 Pfam Urease beta subunit 145 241 IPR002019 GO:0035550|GO:0043419
Cpe01g01606 806 SUPERFAMILY Composite domain of metallo-dependent hydrolases 664 718 IPR011059 GO:0016810
Cpe01g01606 806 CDD Urease_alpha 282 805 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cpe01g01606 806 CDD Urease_gamma 16 112 IPR002026 GO:0016151|GO:0043419
Cpe01g01606 806 PIRSF Urease 664 806 IPR008221 GO:0006807|GO:0009039|GO:0016151
Cpe01g01606 806 PIRSF Urease 13 665 IPR008221 GO:0006807|GO:0009039|GO:0016151
Cpe01g01606 806 TIGRFAM urease_gam: urease, gamma subunit 13 113 IPR002026 GO:0016151|GO:0043419
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01606 K01427 URE; urease [EC:3.5.1.5] - csv:101209590 1408.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01606 Cpe09g00577 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01606 Cpe-Chr1:9802155 Cpe09g00577 Cpe-Chr9:3984607 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01606 Cpe_Chr01 FPKM 26.147697 29.522795 18.023851 17.366787 11.901354 11.431999 12.475224 23.31123 23.349211 22.502365