Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01608 ATGGATGTTCCGGAGGTTGAGGAAATTTTTTTTGCTGCCGGTGATGCCAAGTTGCATGGAGAAATGTACAAGAAGCTCGCTGCAATTTATGGTCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGGAGCAAAACTGGTATTCAGGCTTTGTGTTCGTTACATGTTGCTCTTGAGAAGGCCAAGAATACTCTTCAGCATTGCTCGGAGTCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAGAAGGCAAGATGTTCTCTTGAAGCTAGTCTTATATGCGTTGAAGATATTGTCTCACAATCAATTGGATTTCAGATTCAGCCAATAGTGAACGAACTCAAGGACACTGTTTTCTTACTGGATCCACTCGAGAAACAGGTTGGTGATGATATCATTGCACTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGCCACAATGAGCTAGAGCATTTTCATATGGCTGCCACGAAACTTGGAATTACCTCATCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTATCTTTTGCATCTCATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGGTATTGGATGACACCGACTCACAGGGTGGATCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTCGAGGACAATGGACTTACAGCAAACGGTCAAGCCTTTGAACAGCAGCTTTCAAAGCTTAGTTCCTTTAATTTCAAGCCGAATTATAGGACATCAGGGAAGATGCCTCTTCCACCCGAGGAGTTGAGGTGTCCAATATCATTGCAGCTAATGTACGATCCTGTAATAATTGATTCTGGGCAAACATATGAAAGGATCTGCATAGAAAAGTGGTTCAGTGATGGTCATAAAACCTGCCCGAAGACCCAACAGAGGCTCTCCCACCTGTCCATGACGCCTAATTATTCTGTGAAGGGTCTCATTGCTAATTGGTGTGAACATAATGGTGTTCCGATCCCTGATGGTCCACCAACGTCACTTGATCTGAATTATTGGAGGCTTGCATTGTCTGATTCTGAGTCTGGAACATCAAGATCTGTGGACAATGTCGGTGGCTCTCACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAAGAAAGTGGATCAATTAAAGTTGATGAAGAAAATGAAGCAGATGATAATACATGCACGGAGGAGTCGTCTAATTTCATTACACTGGAGAGTTGTGTAAATTTTATGACAGTATTGACTGAAGAGGGAGACTTCAGAACAAAATGTAGGGTTGTGGAGCAGATAAGACTTGCACTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTGATTGAAGAAAACGCTGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATTGCAGCGGGTGTAATCTCGTTATTAGAGAACATGATTTTGAAACCCAATTTACATGGACCTGCAACAGCTCTGTATTTGAATCTTTCCTGCCTAGAAGATGCCAAACCCATCATTAGTTCGAGTAGAGCCGTTCCTTTCCTGATCCAGCTGCTTACTCGTAACGGCGAATCCCAAACCAAGCTCGATGCGCTTCATACCCTCTATAACCTTTCAACCACGCCCTCCATCATTCCTGTTCTTCTCTCCGCTGGTATTATCGCTGGACTTCAATCCTTCATCGCAGCTCCGAGCGACAGCACGTGGACAGAGACTTCCTTAGCTATCTTAATAAACATAGCTTCAAGCCAGTTGGGTATAGAACAAATAACTTCGGCTCCAGAGCTTATCAGTGGGTTGGCAGCAATCGTGGACGCCGGCGAACGCGCCGAGCAGGAGCAAGCTGTCTCGTGTTTGTTGACTTTGTGTAGAGGGAGTGAAAGATGCAGTCAAATGGTGTTACAAGAAGGAGTGATTCCGGGATTGGTGGCAGTTACAGTAAATGGGAGTTCAAGAGGGAAAATAAAAGCTCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGACACAGCCGATACCATTCAGCAGCGAGATGGAAATAGCGACGCAGCAGCCATGGCTGCTCCAGACTATAAGCCATTATGCAAATCAGTGTCGAAGAAAAAGATGGGGAAAGCTTTAAGCTTTTTTGCGAAGAGCAAACGATTTTCACTCTACCAATGTTGA 2313 43.8 MDVPEVEEIFFAAGDAKLHGEMYKKLAAIYGQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLQHCSESSKLYLAITGDAVLAKFEKARCSLEASLICVEDIVSQSIGFQIQPIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHMAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRSEVLDDTDSQGGSTPCSPTVRCSLEDNGLTANGQAFEQQLSKLSSFNFKPNYRTSGKMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQRLSHLSMTPNYSVKGLIANWCEHNGVPIPDGPPTSLDLNYWRLALSDSESGTSRSVDNVGGSHTLKEVKVVPLEESGSIKVDEENEADDNTCTEESSNFITLESCVNFMTVLTEEGDFRTKCRVVEQIRLALKDDDEARILMGANGFAEALMEFLTLALIEENADAQESGAMALFNLSVNNNRNREMMIAAGVISLLENMILKPNLHGPATALYLNLSCLEDAKPIISSSRAVPFLIQLLTRNGESQTKLDALHTLYNLSTTPSIIPVLLSAGIIAGLQSFIAAPSDSTWTETSLAILINIASSQLGIEQITSAPELISGLAAIVDAGERAEQEQAVSCLLTLCRGSERCSQMVLQEGVIPGLVAVTVNGSSRGKIKAQKLLMLFREQRQKDTADTIQQRDGNSDAAAMAAPDYKPLCKSVSKKKMGKALSFFAKSKRFSLYQC 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9816481 9821633 - Cp4.1LG01g16070.1 Cpe01g01608 462921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01608 770 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Cpe01g01608 770 CDD RING-Ubox_PUB 284 326 IPR045210 -
Cpe01g01608 770 SMART arm_5 546 587 IPR000225 GO:0005515
Cpe01g01608 770 SMART arm_5 507 545 IPR000225 GO:0005515
Cpe01g01608 770 SMART arm_5 461 505 IPR000225 GO:0005515
Cpe01g01608 770 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Cpe01g01608 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cpe01g01608 770 SUPERFAMILY ARM repeat 435 703 IPR016024 -
Cpe01g01608 770 Gene3D - 403 730 IPR011989 -
Cpe01g01608 770 PANTHER U BOX DOMAIN-CONTAINING 1 731 - -
Cpe01g01608 770 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 1 731 - -
Cpe01g01608 770 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Cpe01g01608 770 SUPERFAMILY RING/U-box 279 356 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01608 Cpe09g00579 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01608 Cpe-Chr1:9816481 Cpe14g00527 Cpe-Chr14:3329480 2.78E-77 dispersed
Cpe01g01608 Cpe-Chr1:9816481 Cpe11g00066 Cpe-Chr11:355247 0 wgd
Cpe01g01608 Cpe-Chr1:9816481 Cpe07g00054 Cpe-Chr7:256630 0 wgd
Cpe01g01608 Cpe-Chr1:9816481 Cpe09g00579 Cpe-Chr9:4001540 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01608 - - csv:101210079 1367.83