Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01612 ATGTTCGGAGCTCAACAGTCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACTTTGCGATCAACTCCGGCCTTTGGCACTTTGCGATCAACTCCGGCCTTTGGCACTCCGCAGTCAACTCCGGCATTTGGCACTCCACAATCGACTCCAGCATTTGGCACGCCGGCGTCCACTCCTGCCTTCGGAACTCCATCGGCATCTCCCGCATTTGGAAACCTTTCAACTCCTGCCTTCGGAACTCCATCTACATCGTCTTTTGCCACCGGCTTCGGTTCGTCTCTCTTCTCCACTCCATTCTCTTCTCAGCCTTTACAACAGCAACAGCAGCAGCAGCAATCGCCGCTGTTTCAGCAGCGAGGCGCCACAGGATTCGGTTTCCAGACTCCGTTTGCAGCGCCTCAGTCCAGTCCATTTCCAAATGCTCAACTGATCACTCAGATGGCGCCGGTGGCACCGCTTCCTTTCTGCCTGGCTGATCGAGATATTCAAGCAATTGTTGAGGCATACAAGGACGACGCAGGAAACCCTAAGTATGCTTTCAAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCAGGTGTATCGGATACAATGTGGGCTGAGGCAATGGCAAAACTAGAAGGCATGGAAAGTGCGGATAGAGAGCGATTGTGGCCACAGCTTGTTCAAGGATTTAAGGATTTATCTCAGCGCTTGAAGATTCAAGATGAAGTCATTCTCGCTGATGCTGAGAGGCTGCGGATGACCCAAAGCAATGTCAAAATGCTTCAGAGGCACTTTCTTGCTGATACTCTACCATGGGTTCAAAGATTGAAACAGAAGGAGCAAGGTCTTCAAAGGCGTCTTTTGAGAGTCATGAGAATTGTGGAGGCACTAGAAAGTAAGGGTTGCCGAGTGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGTTAAGTTTGATAACGAGGCAGTTCAAAGAATCTGGGGCAGAGCTTTCAAGAAGGGTGCAAAATTTGCTTATGATTACTCGTGGCCAACCAAATGGCTCTGGTGCTGGTAATTCCATCTATCTTCAAGGATCTGCAAAAATACACGAACAGAGTCTTGCTGATATGCAGGAGGTTTTGCAGCAGCAGACGGAGGCCATTGCTAGACTTGGAACTGTGTTGAAGCGAGACGTTAGAGACATGGAAATCATAATGGCTGAAGACAACGAGATGACAGATGATCCGAGTTAA 1248 49.44 MFGAQQSSSAFGTPQSTPAFGTLRSTPAFGTLRSTPAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSTPAFGTPSTSSFATGFGSSLFSTPFSSQPLQQQQQQQQSPLFQQRGATGFGFQTPFAAPQSSPFPNAQLITQMAPVAPLPFCLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDTMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILADAERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDNEMTDDPS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9856966 9861785 - Cp4.1LG01g16190.1 Cpe01g01612 462925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01612 415 MobiDBLite consensus disorder prediction 1 72 - -
Cpe01g01612 415 PANTHER NUCLEOPORIN P54 1 409 IPR024864 GO:0005643
Cpe01g01612 415 PANTHER NUCLEOPORIN P54 1 409 - -
Cpe01g01612 415 Pfam Nucleoporin complex subunit 54 199 343 IPR025712 -
Cpe01g01612 415 Coils Coil 365 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01612 K14308 NUP54, NUP57; nuclear pore complex protein Nup54 - csv:101211067 667.537
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01612 Cpe09g00582 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01612 Cpe-Chr1:9856966 Cpe05g00756 Cpe-Chr5:4669581 2.10E-09 dispersed
Cpe01g01612 Cpe-Chr1:9856966 Cpe09g00582 Cpe-Chr9:4024880 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1218 . . . . . Bpe10g00788 . Bma15g00233 Cmo04g01925 Cmo18g00695 . Cma18g00706 . Car18g00652 Sed06g1743 Cpe09g00582 Cpe01g01612 Bhi07g01913 Tan04g0060 Cmetu10g0980 Lac13g0060 Hepe10g1524 . . . . . . . . . . . . . Lsi04g00670 . . Cme10g00649 Blo06g00833 . . . . . . . . . . Cma04g01829 . Car04g01843 . . . . . . . . . . Cla11g01349 Cam11g1407 Cec11g1433 Cco11g1427 Clacu11g1564 Cmu11g1385 Cre11g1805 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007686 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01612 Cpe_Chr01 FPKM 7.118657 8.207443 0.499625 0.438712 5.403203 3.453385 5.374902 0.172418 0.301577 0.368087