Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01634 ATGGAGACTCACTTTAATCACAATCTATTCGACAGGCGACCCATTCGGAAGAACACGAATTCTTCTGTCAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTTTCAAATGGGTTACAGAGGATACATTGAAGGCACTACAGGAGAAGTCAAAACAGTCGGAAGCACCAGAACCTGAACCTGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGGCAATATGTTTGTCACTACGATGGCTGTGGAAAGAAATTTTTGGATAGCTCGAAGTTGAAAAGACACTTCCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCACATATGAAAACGCATTCACAAGAGAACTATCATATCTGTCCATTCCCTGATTGTGGAAAGAGATTTGCGCACGAGTACAAATTGAAGAACCACGTTACATCTCACCATGAAAAGAATGCGACAGCTGAAGTGGTCAAATATACCCCACCTTTCGAGAAGCAAACTAAGGCTTCTAAACCTTCTGGGGGAGCTTCTGCTTCGGCATCATCAGACCGTCCACACGCTTGCCCCTATGAAGGGTGTGAAAAGGCGTACATCCATGAATACAAGCTTAAACTCCATTTGAAAAGGGAACACCCTGGACATTTTGTAGAAGACAATGGCAATGCTCCACATAATGGGGAAAATGAGATAGAAGCCAGTGATCAAGATGGCTATGGCGGAAAACGGGTAAATGTAAAAAACCAGAAACGGAACAGGCCTAAACCAAACTTGAAGTTACCCCCTTCGAAAGTAGCACAGCGAAAAGGCGCAACGCCATCTCCTGCCCCAATGAGTGCTGCAGTTAAAAAATCATGGCGGGTTAAAGAAGAAAACTACGAAGAAGAAGAAGAAGATAGTGAAGAAACGGAGGAGGACCGTGAGAATGTGGAGGGCTGGGGATATGCTGAAAACGAAGATGATGATGAGGAAACAGAGTATGAAGATTAA 1116 43.73 METHFNHNLFDRRPIRKNTNSSVKWIKEWVPQDVVATGGKCFLFKWVTEDTLKALQEKSKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPFPDCGKRFAHEYKLKNHVTSHHEKNATAEVVKYTPPFEKQTKASKPSGGASASASSDRPHACPYEGCEKAYIHEYKLKLHLKREHPGHFVEDNGNAPHNGENEIEASDQDGYGGKRVNVKNQKRNRPKPNLKLPPSKVAQRKGATPSPAPMSAAVKKSWRVKEENYEEEEEDSEETEEDRENVEGWGYAENEDDDEETEYED 371
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 9994593 9999241 - Cp4.1LG01g16380.1 Cpe01g01634 462947
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01634 371 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 370 - -
Cpe01g01634 371 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Cpe01g01634 371 MobiDBLite consensus disorder prediction 334 350 - -
Cpe01g01634 371 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Cpe01g01634 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Cpe01g01634 371 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Cpe01g01634 371 MobiDBLite consensus disorder prediction 205 229 - -
Cpe01g01634 371 MobiDBLite consensus disorder prediction 357 371 - -
Cpe01g01634 371 Gene3D Classic Zinc Finger 103 133 - -
Cpe01g01634 371 SUPERFAMILY beta-beta-alpha zinc fingers 151 192 IPR036236 -
Cpe01g01634 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Cpe01g01634 371 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Cpe01g01634 371 Gene3D Classic Zinc Finger 134 161 - -
Cpe01g01634 371 Gene3D Classic Zinc Finger 77 102 - -
Cpe01g01634 371 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Cpe01g01634 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Cpe01g01634 371 SUPERFAMILY beta-beta-alpha zinc fingers 121 163 IPR036236 -
Cpe01g01634 371 Gene3D Classic Zinc Finger 162 191 - -
Cpe01g01634 371 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Cpe01g01634 371 PANTHER BNAA03G13270D PROTEIN 4 370 - -
Cpe01g01634 371 Gene3D Classic Zinc Finger 204 269 - -
Cpe01g01634 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Cpe01g01634 371 MobiDBLite consensus disorder prediction 256 371 - -
Cpe01g01634 371 SMART c2h2final6 77 101 IPR013087 -
Cpe01g01634 371 SMART c2h2final6 136 160 IPR013087 -
Cpe01g01634 371 SMART c2h2final6 229 254 IPR013087 -
Cpe01g01634 371 SMART c2h2final6 106 130 IPR013087 -
Cpe01g01634 371 SMART c2h2final6 166 190 IPR013087 -
Cpe01g01634 371 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Cpe01g01634 371 Coils Coil 328 348 - -
Cpe01g01634 371 MobiDBLite consensus disorder prediction 209 223 - -
Cpe01g01634 371 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01634 Cpe-Chr1:9994593 Cpe20g00334 Cpe-Chr20:1874271 3.51E-12 dispersed
Cpe01g01634 Cpe-Chr1:9994593 Cpe09g00609 Cpe-Chr9:4244947 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48874 PF00096 zf-C2H2 0.00037 CL0361 Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01634 - - cmax:111492851 699.508