Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01664 ATGAAGCTATGGCAAAAGGCTGTGGGCGCAATCAAAGACAGAAATAGCATTTGGCTTGCCACCCTTTCACGCCGCACGCCATATCGCCACCCCGACCTTGAGGCTGCCATAATCCGCGCAACCAGCCACGACGGCGCTAAAATCGATTACAACAACGCCCGACGCGTGTTCGAATGGATCCGTACGTCTCCGATCTACATGAAGCCTCTTGCGTGGGGCCTCTCCGCCCGCATGGAAAAGACTCGAAGTTGGGTCGTTGCTTTAAAGGGGTTGATGCTCATCCATGGGGTGTTTTGTTGCCAAATCCCGTCCGTCCAGCTCATCCGACGGCTGCCGTTCGATCTGTCCGGGTTCAAAGATTGCCATTCCAGCCCTTCCAAGACTTGGGGGTATGATGCGTTTGTGAGAAGCTACTATGCGTATTTGGATCAGAAATCAGCCTTCATATCTTCGGAGGCTAAGAAATTGAAGAAAGGGTTGAAGCCACCATTGTTGGAGGAGTTGATTAAGCTTCAAAATTGGCAATCTATGTTGGATACCTTGCTTCAAGTTCGACCATTGGATGACAACATGAAGGCAAGTGAGTGCCCAAAATTGGAGAAGATCCCAGAAGATGATATCAAAGAACTTGAGCTGATCATCAATGGAAGTGTTAACAATGATGAGAAAACAAAACATTGTGAAGTTCTTGAAGAAGAAAAAATGGGGAATGATAATATGATTAGAGAGGGAGACGACCACGACCACGACCACGACGATGACGATAATAATAAGAATAATAATAACAACAACAATGGAGAAGAAATGAATGGAATTAGAAGGAATGGATCAAATAAAAGGGTTTTGAAGACAGTGATTACAGAGAAATGGGAGATATTTGATGGAGATTGTTCATCAAGAACAGCATTGGCAGGGCCTCTTCCAAGCTGTTCTTCATCCCATTTGAGTATCATTTCTATACCAAATTATAAGTCAGAGCTACCAGATTTGATCACTTTCTAG 1002 44.81 MKLWQKAVGAIKDRNSIWLATLSRRTPYRHPDLEAAIIRATSHDGAKIDYNNARRVFEWIRTSPIYMKPLAWGLSARMEKTRSWVVALKGLMLIHGVFCCQIPSVQLIRRLPFDLSGFKDCHSSPSKTWGYDAFVRSYYAYLDQKSAFISSEAKKLKKGLKPPLLEELIKLQNWQSMLDTLLQVRPLDDNMKASECPKLEKIPEDDIKELELIINGSVNNDEKTKHCEVLEEEKMGNDNMIREGDDHDHDHDDDDNNKNNNNNNNGEEMNGIRRNGSNKRVLKTVITEKWEIFDGDCSSRTALAGPLPSCSSSHLSIISIPNYKSELPDLITF 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10356581 10358830 + Cp4.1LG01g16590.1 Cpe01g01664 462977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01664 333 MobiDBLite consensus disorder prediction 239 276 - -
Cpe01g01664 333 CDD ANTH_N_AP180_plant 33 148 - -
Cpe01g01664 333 PANTHER OS08G0467300 PROTEIN 192 302 - -
Cpe01g01664 333 PANTHER OS08G0467300 PROTEIN 1 193 - -
Cpe01g01664 333 SUPERFAMILY ENTH/VHS domain 32 149 IPR008942 -
Cpe01g01664 333 Pfam ANTH domain 32 192 IPR011417 GO:0005543
Cpe01g01664 333 ProSiteProfiles ENTH domain profile. 25 156 IPR013809 -
Cpe01g01664 333 Gene3D - 5 151 IPR008942 -
Cpe01g01664 333 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 193 IPR045192 GO:0048268|GO:0072583
Cpe01g01664 333 PANTHER CLATHRIN ASSEMBLY PROTEIN 192 302 IPR045192 GO:0048268|GO:0072583
Cpe01g01664 333 MobiDBLite consensus disorder prediction 239 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01664 - - - csv:101214877 396.356
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00022 Cpe-Chr1:130975 Cpe01g01664 Cpe-Chr1:10356581 3.16E-123 dispersed
Cpe01g01664 Cpe-Chr1:10356581 Cpe06g00339 Cpe-Chr6:1877569 1.17E-13 dispersed
Cpe01g01664 Cpe-Chr1:10356581 Cpe06g00337 Cpe-Chr6:1864979 4.36E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g499 . . . . . Bpe10g01000 . . . . . . . . . . Cpe01g01664 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01889 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009008 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01664 Cpe_Chr01 FPKM 694.761658 680.769104 1501.056763 1431.187866 414.709167 480.612457 415.889893 704.337646 762.382202 697.013062