Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe01g01672 | ATGGATGGAAATGGTGGGATGAAGTGGACTGGAATCCGCCATTTTGTGAGGCTGAAACAGACTCTCCAACACTGGCAAGCTGTCACAGTTAACCCGAAATCCCAAGCATCCAATAAAAATCAAAGCCAAAGCCAAAATCATAATCGTGGGATCCTTTCACCAGCAATCAACAAAAGGCTGATGAATGCCATGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCTATCCGATGTCCCGAAAGGGTACTTGGCTGTTTATGTTGGGCCGGAGCTTCGTAGGTTTATCATTCCCACCAGCTATCTTAGCCATTTGGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTATGGATTCGATCACAGTGGTGGGCTCACACTCCCATGCGAGATCGAGACCTTCAAATACCTTCTCAAGTACATGGAGGTTCAGCAGCTCGATGATCATCCTGATGAGCAGACCCCAGCTGAGAGTTCTTTAAGCATGGAAGGATAA | 507 | 47.93 | MDGNGGMKWTGIRHFVRLKQTLQHWQAVTVNPKSQASNKNQSQSQNHNRGILSPAINKRLMNAMCCDSDEESCQSPEHLSDVPKGYLAVYVGPELRRFIIPTSYLSHLVFKVLLEKAEEEYGFDHSGGLTLPCEIETFKYLLKYMEVQQLDDHPDEQTPAESSLSMEG | 168 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 10473645 | 10476180 | + | Cp4.1LG01g16680.1 | Cpe01g01672 | 462985 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe01g01672 | 168 | Pfam | Auxin responsive protein | 58 | 144 | IPR003676 | GO:0009733 | |
| Cpe01g01672 | 168 | PANTHER | BNAA02G05090D PROTEIN | 7 | 158 | - | - | |
| Cpe01g01672 | 168 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 7 | 158 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g01672 | Cpe-Chr1:10473645 | Cpe06g00409 | Cpe-Chr6:2329915 | 1.63E-24 | dispersed | |
| Cpe08g01006 | Cpe-Chr8:7776052 | Cpe01g01672 | Cpe-Chr1:10473645 | 2.01E-18 | dispersed | |
| Cpe19g00478 | Cpe-Chr19:4158045 | Cpe01g01672 | Cpe-Chr1:10473645 | 5.67E-18 | dispersed | |
| Cpe01g01672 | Cpe-Chr1:10473645 | Cpe02g00389 | Cpe-Chr2:2156077 | 5.43E-26 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe01g01672 | K14488 | - | csv:101207913 | 248.825 |