Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe01g01712 | ATGGAGCTCACTACTCAAGATCATCCCATTCCCATCCCCATCCCTTTAAATAGTCGCTACGGTGGCCACGACCTCGACCACGACCATGTCATCCATCACCATGACCCGTCCGCCGCTTGCAACCATATCATCGCGGCCGCAGTCAATGGCGGTAGCCCACTTCCATCTTCTCAGATGGAAGTCGAGCTTCACCATAATCATAACAACAACAACAATAACAACAACACGAACACGAAGAAGCAGGTAAAATATAAAGAGTGTCTCAAAAACCATGCGGCCTCCATGGGAGGTAATGCCACAGATGGGTGTGGCGAGTTCATGCCGAGTGGAGAAGAAGGATCCATTGAAGCACTCACGTGTTCGGCTTGCAATTGTCATAGAAACTTCCATCGAAAAGAGATCGAGGGAGAACCCTATGATTGGCTCCACCACCCTCGACTCGGGAGGAAGCTCCTCGTCGGAGGGAAGAACATGATCGCCCCACCAGAGGCAGCTGCATTTGCGTATCCATCCGTGGCGGGGCCGGCGTTCATATCGTCTAGAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGCGGGGGAGGTGGGCAGTCAGAGTCGGAGGAGCACGAGGAGGCGAGGGCGTACTCGGGGCCAATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAAAAGGAGAAGATGCTGAGGTTTGCTGAGAAAGTTGGATGGAAGATTCAGAAACAAGAGGAGAGTGTGGTGCAGCAATTCTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAATAAGCACAATCTTGGGAAGAAGGATACCATTTCTCCTCCCCATTCTCCTACTCCCTTAACTTAA | 885 | 51.19 | MELTTQDHPIPIPIPLNSRYGGHDLDHDHVIHHHDPSAACNHIIAAAVNGGSPLPSSQMEVELHHNHNNNNNNNNTNTKKQVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPSVAGPAFISSRAQPHHMIMSYNMLGGGGGQSESEEHEEARAYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCEEIGVKRRVLKVWMHNNKHNLGKKDTISPPHSPTPLT | 294 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11426926 | 11427810 | + | Cp4.1LG01g17110.1 | Cpe01g01712 | 463025 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe01g01712 | 294 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 219 | 275 | IPR006455 | - | |
| Cpe01g01712 | 294 | Gene3D | - | 202 | 280 | - | - | |
| Cpe01g01712 | 294 | Pfam | ZF-HD protein dimerisation region | 81 | 134 | IPR006456 | - | |
| Cpe01g01712 | 294 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 83 | 134 | IPR006456 | - | |
| Cpe01g01712 | 294 | SUPERFAMILY | Homeodomain-like | 211 | 280 | IPR009057 | - | |
| Cpe01g01712 | 294 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 84 | 133 | IPR006456 | - | |
| Cpe01g01712 | 294 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 41 | 281 | - | - | |
| Cpe01g01712 | 294 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 4 | 41 | 281 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g01712 | Cpe-Chr1:11426926 | Cpe08g01331 | Cpe-Chr8:9566459 | 2.16E-137 | dispersed | |
| Cpe01g02394 | Cpe-Chr1:19993956 | Cpe01g01712 | Cpe-Chr1:11426926 | 1.65E-51 | dispersed | |
| Cpe02g01062 | Cpe-Chr2:9738852 | Cpe01g01712 | Cpe-Chr1:11426926 | 1.09E-22 | dispersed | |
| Cpe13g00949 | Cpe-Chr13:7977814 | Cpe01g01712 | Cpe-Chr1:11426926 | 1.30E-54 | dispersed | |
| Cpe01g01712 | Cpe-Chr1:11426926 | Cpe07g00420 | Cpe-Chr7:2710667 | 2.43E-62 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 48878 | PF04770 | ZF-HD_dimer | 1.20E-29 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe01g01712 | - | - | bhj:120068944 | 482.641 |