Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01740 ATGATGGAAGATGATGCCAAACGACAGCTGAAGGCTACAAACATTATGGCAAATAAAACCCAGTTGCCTTGCGACGGCGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCCGACTTGGAGACGATCACATGCAAAACTTGCGTCACCCCTTGGCACGTCGATTGTCTCTCAAGTCCCCCTGAAACCCTGGAATCGACCCTTCAATGGGACTGTCCCGATTGTTCCTCCCCTCCCGAAGATGTTCCCCTTCCTCCGCTCGGCAACAATCCACTCCCCACTACGCCTTCTAGTGACCTTGTTGCTTCGATTCGAGCCATTGAGGCTGATGTCTCCCTTACTGACCGTGAGAAGGCAAAGAAGCGCCAGGAGCTTCTCAGCGGAAAGTTGCAGTCCGACAAGGATGATCCTGATGCCAACAAGGAAAAGAAAAAAAAGGGGGACGATGTTTTGGATTTGTTGGACGAGAGATTGAACTGCTCGTTCTGCATGCAATTACCAGAAAGGCCAGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTTATACCCTCCAAAATGGCTAGCCAGCCCCGTATAAATTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTAGTTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCGGACAAAGCCTATACCACTGACCGGGCACAAAGAAATGGGAAGGCTAATGCTGCCAGTGGAAAAATTTTTGTTACAATTCCATCTGATCATTTTGGTCCCATTCCTGCTGAAAATGATCCCGAGAGAAACCAGGGTGTTCTGGTCGGTGAATGCTGGGAGGATCGGCTAGAATGTCGTCAATGGGGTGCTCACTTTCCACATGTTGCAGGTATAGCGGGACAGTCAAATAATGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATCAAACCAAGCGCTACAAGTTAGTTGCTTGAAGGGCTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGTGATGAACATGGAGATCGACCTAGACCCTTACCTAAAATTTCAGAGTTGAAAAAAGCGACGGATATTACGGAGAGGAAGGGAGGATCCTCATGGGACTTTGATGAGAGCGATAGTCGATGGAAGTGGAGCAAAGCTCCACCAACGAGCAAGAGACCAGTTGAAGCCGAAGATTCTGCTTCTGGGAAGAGGAGAAAAATTAGGCAATCGCGTAACATGAGTGTCCGAGAAAGGTTACTAAAAGAGTTTAGCTGCCGTATTTGCCGGGAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCACTGAAAAGTAAGATCGAAGAAGGGGATGCATCTGAGAAGCTCTGTGAAGAAGTGATAGATGGGGAAGAGGAGGGAAGAGATGGAAGCAATGGGAATGAAAGCAGCAGTTCAGTAGAAACAACAAGAAAGCGAGCAAAGGTGGATGATTCGGAATGA 1680 47.26 MMEDDAKRQLKATNIMANKTQLPCDGDGICMLCKAKPSDLETITCKTCVTPWHVDCLSSPPETLESTLQWDCPDCSSPPEDVPLPPLGNNPLPTTPSSDLVASIRAIEADVSLTDREKAKKRQELLSGKLQSDKDDPDANKEKKKKGDDVLDLLDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSLVSGGPQKVYHFVHNQNRPDKAYTTDRAQRNGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNQALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRDEHGDRPRPLPKISELKKATDITERKGGSSWDFDESDSRWKWSKAPPTSKRPVEAEDSASGKRRKIRQSRNMSVRERLLKEFSCRICREVNRELLDVIESLKSKIEEGDASEKLCEEVIDGEEEGRDGSNGNESSSSVETTRKRAKVDDSE 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12275666 12282272 + Cp4.1LG01g17400.1 Cpe01g01740 463053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01740 559 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 16 408 IPR045134 -
Cpe01g01740 559 SMART G9a_1 283 412 IPR003105 -
Cpe01g01740 559 MobiDBLite consensus disorder prediction 393 477 - -
Cpe01g01740 559 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 409 498 IPR045134 -
Cpe01g01740 559 SMART ring_2 160 198 IPR001841 -
Cpe01g01740 559 ProSiteProfiles YDG domain profile. 288 445 IPR003105 -
Cpe01g01740 559 MobiDBLite consensus disorder prediction 393 449 - -
Cpe01g01740 559 Gene3D - 259 408 IPR036987 -
Cpe01g01740 559 ProSiteProfiles Zinc finger PHD-type profile. 27 78 IPR019787 -
Cpe01g01740 559 CDD RING-HC 160 198 - -
Cpe01g01740 559 MobiDBLite consensus disorder prediction 79 98 - -
Cpe01g01740 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 227 IPR013083 -
Cpe01g01740 559 SUPERFAMILY PUA domain-like 262 408 IPR015947 -
Cpe01g01740 559 SUPERFAMILY RING/U-box 151 206 - -
Cpe01g01740 559 MobiDBLite consensus disorder prediction 123 148 - -
Cpe01g01740 559 Pfam SAD/SRA domain 291 408 IPR003105 -
Cpe01g01740 559 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 409 498 - -
Cpe01g01740 559 SUPERFAMILY FYVE/PHD zinc finger 21 83 IPR011011 -
Cpe01g01740 559 MobiDBLite consensus disorder prediction 515 559 - -
Cpe01g01740 559 SMART PHD_3 29 76 IPR001965 -
Cpe01g01740 559 Pfam Zinc finger, C3HC4 type (RING finger) 160 198 IPR018957 GO:0046872
Cpe01g01740 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 77 IPR013083 -
Cpe01g01740 559 ProSiteProfiles Zinc finger RING-type profile. 160 199 IPR001841 -
Cpe01g01740 559 ProSitePatterns Zinc finger PHD-type signature. 30 75 IPR019786 -
Cpe01g01740 559 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 16 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01740 Cpe-Chr1:12275666 Cpe03g01550 Cpe-Chr3:12047798 4.52E-13 dispersed
Cpe01g01740 Cpe-Chr1:12275666 Cpe04g01640 Cpe-Chr4:12672072 9.79E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01740 K10638 - csv:116401648 866.3