Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01758 ATGAAGGAGGAAGGAGAGTGCTTTCAGGGGTTTCAAGACCACCTCCTAATGCAACAATTCCAGACTATGCAACAAAACAGCGACGTTTTTGGAGTAGGAGGTGGTGGAGGAGGAGGAGGAGGCTTGATTTTTCCTGAAGTTTCTCCTATGATGTTTACGCCTCCGTGGACCGCGACCACAACCATCCCTCAAGTCCACCACGACCCCTTCATCCCGCCGCCGCCCCCACCTTCCTACGCCAGCTTCTTCAATAGGAGAAATGCTTCTCTGCAGTTCCCTTACGATATTGGGAACAATAGCCTTGGAATTGGGCATATGGGTCAGCCTGGGTCTTGCCCCTTTGGGCTGCAGGCCGAGCTCAGTAAGATGAGCGCTCAAGAAATAATGGACGCCAAAGCTCTTGCTGCCTCTAAAAGCCATAGTGAAGCTGAGAGACGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAGTACCACCAAAACGGACAAGGCCTCCTTGCTTGCAGAGGTAATTCAACATGTAAAAGAGCTGAAACGCCAGACGACATTGATAGCTGATGTAAGTCCAGTTCCGACCGAGCTCGACGAGCTATCAGTTGACGTCGATGCATCCGACGAGGACGGTAAGTTCGTGATAAAAGCCTCACTTTGTTGTGAGGACAGGTCCGATCTTCTCCCACAGATCATTAAAACCCTGAAATCCCTCCGGTTGAGAACCCTAAAAGCGGAGATCACGACGCTGGGCGGCCGAGTAAAGAACGTATTGTTTATCACTGGGGACGACGACTCGTCCAGCGACCAAGAGGAGGCTGAACAGCAGCAGCACCAATACAGCATCAGTTCCATTCAGGAAGCCCTAAAGGGAGTGATGGAAAAGGTTTGTAGCGAAGACCAATCATCCTCAGGCAGCATCAAAAGACAAAGGACCAATAATCACAACAACGTCAATATTTAG 975 49.64 MKEEGECFQGFQDHLLMQQFQTMQQNSDVFGVGGGGGGGGGLIFPEVSPMMFTPPWTATTTIPQVHHDPFIPPPPPPSYASFFNRRNASLQFPYDIGNNSLGIGHMGQPGSCPFGLQAELSKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDDDSSSDQEEAEQQQHQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNNVNI 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13150680 13152649 + Cp4.1LG01g17700.1 Cpe01g01758 463071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01758 324 CDD bHLH_AtAIG1_like 130 209 - -
Cpe01g01758 324 PANTHER TRANSCRIPTION FACTOR BHLH30 58 322 - -
Cpe01g01758 324 SMART finulus 141 190 IPR011598 GO:0046983
Cpe01g01758 324 Gene3D - 130 190 IPR036638 GO:0046983
Cpe01g01758 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Cpe01g01758 324 MobiDBLite consensus disorder prediction 298 324 - -
Cpe01g01758 324 MobiDBLite consensus disorder prediction 301 324 - -
Cpe01g01758 324 Pfam Helix-loop-helix DNA-binding domain 138 184 IPR011598 GO:0046983
Cpe01g01758 324 PANTHER TRANSCRIPTION FACTOR BHLH30 58 322 IPR045847 GO:0003700|GO:0006355
Cpe01g01758 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 189 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01758 Cpe09g00272 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01758 Cpe-Chr1:13150680 Cpe01g02508 Cpe-Chr1:20594562 1.30E-38 dispersed
Cpe01g01365 Cpe-Chr1:8212035 Cpe01g01758 Cpe-Chr1:13150680 1.27E-105 wgd
Cpe01g01758 Cpe-Chr1:13150680 Cpe09g00272 Cpe-Chr9:1586058 1.57E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48884 PF00010 HLH 1.50E-12 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01758 - - pvy:116145962 359.762