Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01761 ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGGTTGTCTTTTCACCCCTATGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAAGTACTTCTTTGTATATATTTAGAGTGCAGTAATGTTATAGATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGATAGCAATTTTGGTCGACAATATCAGGATGTGTAGAGCCTTACTGCCTGGAGATGAAGAAGACAACGTAAGCGATGAAGTTATATGGGAAACGCTTCCTCACTTCTGGGTCTCAATCTCCATGGTTTTCTTCATCGCTGCAACCCTTTTCACTCTTCTTAAGCTTAGTGCCGAATGCTTTGCATTTCTTGTCTGCACGAAGTGGTATAATCCTATGATTCATAGGCATTCTCTTGTTAGAGAATCCAGTTCCTCTTCGCTGACCATTAGATACCTCGACTGGGATAGAGGTGTGGTTGTTTCCTCTGATGAGGTTCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAGTTGGTGGACACATCATGAAGGTTCCTTTAATCATTTTCCAAATCATGCTTTTTATGCGCTTAGAGGGAACCCCTAGGAGTGCTTCCTATATTCCTTGTCTGGTTCTGTTCTCTCCTCTTTTCTTATTGCAAGGGGTGGGTTCAGTATTTGCGGCATATAGGTCAATGGAAAAAATTATAATTTTGCTAGTTGGTTCACCTACCTCTGTAAGATATCTTGATATAAGGTCGAAGGCTCGTGAACTGTTAGGGTTCATGCACCATGGATCGAGGTTACTGGGTTGGTGGTCAATTGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTTTATTCTGCTGGAAATTCTGGGTATGATACTTTCACACCAGAGACTGTAAAGAAAAGGACCAAATCCAATCTAGTTGATGAGATATGGAGATTACAAGCTGCATTAAATCAGCAGACAGAAGTTACGAAATTGAGCCGCCAGGAGCACGAAAAGCTTCTATATGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATTGATATGGTTCTTCTTCCGTGTAGGCATCACATTCTTTGCAGCTCTTGTAGTGAGAAGTGTAATCGTTGCCCAATCTGTCGGGAATCGATCGAAGAACGGCTGCCTGTAAATGATGTTTAG 1353 42.94 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVFVPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSAECFAFLVCTKWYNPMIHRHSLVRESSSSSLTIRYLDWDRGVVVSSDEVQPQVRVCNLQEVGGHIMKVPLIIFQIMLFMRLEGTPRSASYIPCLVLFSPLFLLQGVGSVFAAYRSMEKIIILLVGSPTSVRYLDIRSKARELLGFMHHGSRLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIEERLPVNDV 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13201864 13209585 + Cp4.1LG01g17670.1 Cpe01g01761 463074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01761 450 Pfam Zinc finger, C3HC4 type (RING finger) 401 443 - -
Cpe01g01761 450 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 4 450 - -
Cpe01g01761 450 Pfam Transmembrane Fragile-X-F protein 35 175 IPR019396 -
Cpe01g01761 450 Pfam Transmembrane Fragile-X-F protein 176 278 IPR019396 -
Cpe01g01761 450 ProSiteProfiles Zinc finger RING-type profile. 403 438 IPR001841 -
Cpe01g01761 450 SUPERFAMILY RING/U-box 393 444 - -
Cpe01g01761 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 447 IPR013083 -
Cpe01g01761 450 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 4 450 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01761 Cpe04g01416 CCT
Cpe01g01761 Cpe04g01416 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01759 Cpe-Chr1:13195619 Cpe01g01761 Cpe-Chr1:13201864 8.12E-24 dispersed
Cpe01g01761 Cpe-Chr1:13201864 Cpe18g00744 Cpe-Chr18:7220515 0 dispersed
Cpe01g01760 Cpe-Chr1:13197792 Cpe01g01761 Cpe-Chr1:13201864 4.06E-24 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01761 - - vvi:100249082 650.588