Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g01762 ATGGCCGCCGCCGTTGCTGCAGCAGGTGGGGTTAGTATTGGAGTCTCAAAGCTCCAGCCGCGCCATTTGAAACACCCCACTTCCCCATTTCTCGGCAAGAAGATCAGGTTCAAGCACAAATCGGCCTTCGAATCGGCCTACTGTTGGAGGGTATCGATTAAGAATCCGAGAAGGGTTGTGGTTTCGGCTCTGGGCACCGAGCTCATCGATGTGGTTCATAATCTGTTTGTGGGTGTGGGAGTGGGGCTTCCTTGTACGGTGATGGAGTGCGGTGATATCATTTACAGAAGCACTTTGCCGAAGCCTAATGGATTAACTCTCACAATTCCTGGTGCGATTCTGGCTTTGGGCACTCTTTCTTATCTCTGGGCCACTCCTGGAGTGGCTCCTGGCTTCTTTGATATGTTTATTCTTGCATTCGTCGAGAGGATTTTCAGACCCACTTTCAGAAAGGATGATTTTGTTTTGGGAAAGAAGTTGGGAGAAGGAGCGTTTGGTGTGGTCTATAGAGTGGCACTGGCTAAAAATCCTTCAGAGAAGAAGGAAGGCGACCTTGTCTTGAAAAAGGCTACTGAGTATGGTGCAGTTGAAATTTGGATGAACGAACGAGTGCGACGAGCTTGTGCTAATAGCTGTGCAGACTTCGTGTATGGTTTCCTTGAGAATTCTTCAAAGAAAGGAGGTGGGGAATATTGGCTCATATGGAAGTTTGAAGGGGAAGCTACATTGGCAGATTTAATGCAATCCAAAGATTTTCCCTATAATGTAGAGAGGATGATTCTCGGGGAGGGCCAGCAGCTGCCAAAAGGGTTGGAAAGGGAGAATAGAATCATTCAGACCATAATGCGACAGCTCTTATTTGCATTGGATAGTCTTCACTCCACAGGGATTGTGCATAGGGATATCAAGCCACAGAATATCATTTTCTCTGAAGGATCTCGCACTTTCAAAATCATTGATCTTGGAGCTGCAGCTGATCTTCGAGTTGGCATTAACTATATTCCAAAGGAGTTTCTACTGGATCCTAGATATGCTGCCCCAGAGCAATATATCATGAGCACTCAAACTCCATCCGCTCCCTCGGCTCCAGTGGCAACCGCACTTTCCCCAGTCCTATGGCAGATGAACCTCCCTGATAGATTTGATATCTACAGCACCGGTCTCATCTTCCTACAGATGGCATTTCCAGCAATGCGGACAGATAGCGGCCTCATACAGTTTAACCGTCAATTGAAGAGGTGTGACTATGACTTAGTGGCGTGGAGGAAAAGCGTGGAGCCTCGTGCCAGTGCTGACCTAAGAAAGGGCTTTGAATTGTTGGGTTTAGATGAAGGAATAGGATGGGAACTGTTGACGTCAATGGTTCGATACAAAGCACGACAAAGAACGAGCGCTAAGGCAGCTTTAGCTCACCCATACTTCGACAGGGAAGGTTTATTGGCTCTGTCCTTGGTGCAGAAACTGAGGCTGCAATTCTTTAGAGCTACACAACAAGACTACACTGAAGCTGCTAATTGGATCATTCAGCTAATGGCAAAATCAGGAACTGAGCAGGATGGCGGCTTCACTGAAGCTCAGCTTCTGGAGCTCAAAGAAATCGTGCCGAAGAAGAAAGCGAGTGCTGAAAGAAACGCTCTGGCTTCGATTCTGAAGGTGCAACGGAAGATCCTAAAAACGTTAAACGAAAGCATGGACGAGTTCAGCCGACGAAGCAAGAGCCTGTGGTGGAGTAGGTGGATTCCCAGAGAGGAATGA 1755 47.46 MAAAVAAAGGVSIGVSKLQPRHLKHPTSPFLGKKIRFKHKSAFESAYCWRVSIKNPRRVVVSALGTELIDVVHNLFVGVGVGLPCTVMECGDIIYRSTLPKPNGLTLTIPGAILALGTLSYLWATPGVAPGFFDMFILAFVERIFRPTFRKDDFVLGKKLGEGAFGVVYRVALAKNPSEKKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLENSSKKGGGEYWLIWKFEGEATLADLMQSKDFPYNVERMILGEGQQLPKGLERENRIIQTIMRQLLFALDSLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQMNLPDRFDIYSTGLIFLQMAFPAMRTDSGLIQFNRQLKRCDYDLVAWRKSVEPRASADLRKGFELLGLDEGIGWELLTSMVRYKARQRTSAKAALAHPYFDREGLLALSLVQKLRLQFFRATQQDYTEAANWIIQLMAKSGTEQDGGFTEAQLLELKEIVPKKKASAERNALASILKVQRKILKTLNESMDEFSRRSKSLWWSRWIPREE 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13279746 13283715 - Cp4.1LG01g17640.1 Cpe01g01762 463075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g01762 584 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 1 584 - -
Cpe01g01762 584 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 584 IPR044803 GO:0004674|GO:0009579
Cpe01g01762 584 SUPERFAMILY Protein kinase-like (PK-like) 138 476 IPR011009 -
Cpe01g01762 584 ProSiteProfiles Protein kinase domain profile. 154 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01762 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Cpe01g01762 584 Pfam Protein kinase domain 156 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01762 584 ProSitePatterns Protein kinases ATP-binding region signature. 160 188 IPR017441 GO:0005524
Cpe01g01762 584 Gene3D Phosphorylase Kinase; domain 1 141 236 - -
Cpe01g01762 584 SMART serkin_6 154 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g01762 584 Gene3D Transferase(Phosphotransferase) domain 1 263 478 - -
Cpe01g01762 584 CDD STKc_SNT7_plant 158 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g01762 - - - csv:101207504 1046.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01762 Cpe-Chr1:13279746 Cpe10g01004 Cpe-Chr10:5769562 9.85E-46 dispersed
Cpe01g01762 Cpe-Chr1:13279746 Cpe12g00016 Cpe-Chr12:73274 7.57E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g261 Blo01g00485 Blo16g01053 Bda01g02095 . . . . . . . . . . . . . Cpe01g01762 . . . . . . . . . . . . . . Cone13ag0856 Cone19ag0856 . . . . . . . . . . . Bpe02g02285 Bma01g00154 . . . . Cma04g02007 . . . . . Bhi12g01376 . . . . . . . . . . . . . . Csa05g01509 . Cme09g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010559 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62162 PF00069 Pkinase 1.10E-21 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g01762 Cpe_Chr01 FPKM 0.0 0.0 0.156384 0.289615 0.118333 0.06956 0.066005 0.219971 0.18354 0.311073